Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 92163 | 0.73 | 0.233785 |
Target: 5'- -aGCGCGCGCucgguGGAgccgcCGGGCCCgacgCCGc -3' miRNA: 3'- gaCGCGCGCG-----CCUa----GCCCGGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 92313 | 0.74 | 0.228399 |
Target: 5'- -aGCGcCGCGCGGuccgCGcGGCCCaUCCGc -3' miRNA: 3'- gaCGC-GCGCGCCua--GC-CCGGGaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 131930 | 0.75 | 0.180131 |
Target: 5'- -gGCGCGCGCGGGaccgCGGuGCCCgcgcCCGu -3' miRNA: 3'- gaCGCGCGCGCCUa---GCC-CGGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 21833 | 0.76 | 0.159557 |
Target: 5'- -cGCGCGUGCGGG-CGGGCUCgccCCGc -3' miRNA: 3'- gaCGCGCGCGCCUaGCCCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 48046 | 0.77 | 0.137682 |
Target: 5'- -cGCGCGCGCGG-UCgGGGCCCgcggCCc -3' miRNA: 3'- gaCGCGCGCGCCuAG-CCCGGGaa--GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 19752 | 0.71 | 0.313804 |
Target: 5'- -cGCGCucccGCGCGGGcgCGGGCCCcgUCGc -3' miRNA: 3'- gaCGCG----CGCGCCUa-GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 28898 | 0.71 | 0.319351 |
Target: 5'- cCUGCGCccaaCGCGGAggaaguugacgcCGGGCCCgaggCCGa -3' miRNA: 3'- -GACGCGc---GCGCCUa-----------GCCCGGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 15287 | 0.69 | 0.404626 |
Target: 5'- -gGgGCGCGCGG-UCGcGGCC--UCCGg -3' miRNA: 3'- gaCgCGCGCGCCuAGC-CCGGgaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 44040 | 0.7 | 0.383588 |
Target: 5'- -cGCGCGgcggcCGCGGG-CGGGCagcagauccaggacgCCUUCCGg -3' miRNA: 3'- gaCGCGC-----GCGCCUaGCCCG---------------GGAAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 69226 | 0.7 | 0.383588 |
Target: 5'- gCUGUGCGCGCuGGggCGguucgccgaggcgcuGGCCCgcgCCGa -3' miRNA: 3'- -GACGCGCGCG-CCuaGC---------------CCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 107653 | 0.7 | 0.380417 |
Target: 5'- gCUGCGCGCGCaaacucCGcGGCCCcgCCGg -3' miRNA: 3'- -GACGCGCGCGccua--GC-CCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 49455 | 0.7 | 0.372565 |
Target: 5'- -cGCGCGcCGCGGAaggCGGGCgCgcaggCCGc -3' miRNA: 3'- gaCGCGC-GCGCCUa--GCCCGgGaa---GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 38663 | 0.7 | 0.372565 |
Target: 5'- -gGCGgGUGCGGGccCGGGCCCg-CCa -3' miRNA: 3'- gaCGCgCGCGCCUa-GCCCGGGaaGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 35468 | 0.7 | 0.364824 |
Target: 5'- -gGCGCGCGCGcGUCccgGGGuCCCUgCCGc -3' miRNA: 3'- gaCGCGCGCGCcUAG---CCC-GGGAaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 128110 | 0.71 | 0.342275 |
Target: 5'- -gGCGCgGCGCgGGGUCGGGCCgagUgCGg -3' miRNA: 3'- gaCGCG-CGCG-CCUAGCCCGGga-AgGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 137755 | 0.71 | 0.332102 |
Target: 5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3' miRNA: 3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 72 | 0.71 | 0.332102 |
Target: 5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3' miRNA: 3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 77041 | 0.71 | 0.3271 |
Target: 5'- -cGCGCGCGCGGcccUCGGcgaccgcGCCUggCCGg -3' miRNA: 3'- gaCGCGCGCGCCu--AGCC-------CGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 86897 | 0.71 | 0.32075 |
Target: 5'- cCUGgucCGCGCGCGGcgCGGaCCCgcgUCCa -3' miRNA: 3'- -GAC---GCGCGCGCCuaGCCcGGGa--AGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 79064 | 0.71 | 0.32075 |
Target: 5'- -aGCGCGCGCGugguGAUCGGGUacagcgCCUUCa- -3' miRNA: 3'- gaCGCGCGCGC----CUAGCCCG------GGAAGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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