miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 121022 0.67 0.844529
Target:  5'- aCCCGCUggcGCgGGAGaagCGCCGcCa -3'
miRNA:   3'- -GGGCGAagaUGgCCUCgaaGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 68686 0.67 0.844529
Target:  5'- gCCGCguggggGCCGGcgcggacgacGGCggCGCCGGCc -3'
miRNA:   3'- gGGCGaaga--UGGCC----------UCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 53902 0.67 0.844529
Target:  5'- gCCCGCUUCgc---GAGCggCGcCCGACu -3'
miRNA:   3'- -GGGCGAAGauggcCUCGaaGC-GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 46556 0.67 0.844529
Target:  5'- uCCCGCagcgcgagcgCUGCUGcGAGCgcggccUCGCgCGACa -3'
miRNA:   3'- -GGGCGaa--------GAUGGC-CUCGa-----AGCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 43570 0.67 0.844529
Target:  5'- uUCCGCg---AgCGGcGCUUCGCCGuGCg -3'
miRNA:   3'- -GGGCGaagaUgGCCuCGAAGCGGC-UG- -5'
23808 5' -56.8 NC_005261.1 + 27706 0.67 0.844529
Target:  5'- -aCGCUc--GCCGGAGCccUCGCCG-Cg -3'
miRNA:   3'- ggGCGAagaUGGCCUCGa-AGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 108438 0.67 0.836434
Target:  5'- aCCGCgUCccgGCCGaGcAGCgcgUCGUCGGCg -3'
miRNA:   3'- gGGCGaAGa--UGGC-C-UCGa--AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 15915 0.67 0.836434
Target:  5'- cCCCGCgca-GCCGGGGCcgggGCCGGg -3'
miRNA:   3'- -GGGCGaagaUGGCCUCGaag-CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 134177 0.67 0.836434
Target:  5'- uCCCGCUgCUugCGGAggGCcUgGCgCGGCu -3'
miRNA:   3'- -GGGCGAaGAugGCCU--CGaAgCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 107692 0.67 0.836434
Target:  5'- gCCGCg---GCgGGGGCgcCGCCGAa -3'
miRNA:   3'- gGGCGaagaUGgCCUCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 106244 0.67 0.836434
Target:  5'- gCCGCgccCUACCGG-GCcgcCGCCGcCg -3'
miRNA:   3'- gGGCGaa-GAUGGCCuCGaa-GCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 88484 0.67 0.836434
Target:  5'- gCCGC----GCCGGAGCgcgccgCGCuCGACc -3'
miRNA:   3'- gGGCGaagaUGGCCUCGaa----GCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 31520 0.67 0.836434
Target:  5'- -gCGCUgggCaACCGGcugcuGCUgagCGCCGACu -3'
miRNA:   3'- ggGCGAa--GaUGGCCu----CGAa--GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 73764 0.67 0.833145
Target:  5'- gCCGCUUCUACgaGGcGCUggccugcgacgugCGCgCGGCg -3'
miRNA:   3'- gGGCGAAGAUGg-CCuCGAa------------GCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 119966 0.67 0.828156
Target:  5'- aCCCGCcgUCU-CCGucGAGCcccgGCCGACg -3'
miRNA:   3'- -GGGCGa-AGAuGGC--CUCGaag-CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 59384 0.67 0.828156
Target:  5'- gCCCGCgccacggCgccgaGCCcGGGC-UCGCCGGCg -3'
miRNA:   3'- -GGGCGaa-----Ga----UGGcCUCGaAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 106112 0.67 0.828156
Target:  5'- gCCgGCgUC-GCCGGcGCgcgcgCGCCGGCa -3'
miRNA:   3'- -GGgCGaAGaUGGCCuCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 14239 0.67 0.828156
Target:  5'- aCCGCgccgGCCGGGGCcUUUGCCc-- -3'
miRNA:   3'- gGGCGaagaUGGCCUCG-AAGCGGcug -5'
23808 5' -56.8 NC_005261.1 + 24170 0.67 0.828156
Target:  5'- gUCGCaggCUuCCGGGGggUCGUCGGCg -3'
miRNA:   3'- gGGCGaa-GAuGGCCUCgaAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 78817 0.67 0.828156
Target:  5'- cCCCGacgUCggacauCgGGAGCUgcgguaCGCCGGCg -3'
miRNA:   3'- -GGGCga-AGau----GgCCUCGAa-----GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.