Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2381 | 5' | -57.8 | NC_001416.1 | + | 3384 | 0.66 | 0.553248 |
Target: 5'- cGACaGCCGGAacuGCcguGCCGguGugCAGa -3' miRNA: 3'- aCUG-CGGCCUgu-CG---UGGUguCugGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 10069 | 0.66 | 0.553248 |
Target: 5'- gGACGCCGGGC----CCGCAGAgCCu- -3' miRNA: 3'- aCUGCGGCCUGucguGGUGUCU-GGuc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 5098 | 0.66 | 0.553248 |
Target: 5'- aUGACGuCCGGG-AGaCACUGCAGucCCGGa -3' miRNA: 3'- -ACUGC-GGCCUgUC-GUGGUGUCu-GGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 8924 | 0.66 | 0.531931 |
Target: 5'- -cGCGCCGGuaguCAuaGCCGCuGGCCAc -3' miRNA: 3'- acUGCGGCCu---GUcgUGGUGuCUGGUc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 17995 | 0.66 | 0.510917 |
Target: 5'- cUGACGgaGGAUAaCGCCAgCAGACUGGa -3' miRNA: 3'- -ACUGCggCCUGUcGUGGU-GUCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 4690 | 0.66 | 0.510917 |
Target: 5'- ---aGCCGGACgcgGGCGCUGCAG-CCGu -3' miRNA: 3'- acugCGGCCUG---UCGUGGUGUCuGGUc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 11044 | 0.66 | 0.504679 |
Target: 5'- aGA-GCCGGGCAgGCGgCAgggcugacguuuaacCAGACCAGc -3' miRNA: 3'- aCUgCGGCCUGU-CGUgGU---------------GUCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 39471 | 0.66 | 0.50054 |
Target: 5'- ---gGCCGGGCucAGCACguuacCGGACCAGa -3' miRNA: 3'- acugCGGCCUG--UCGUGgu---GUCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 5885 | 0.66 | 0.500539 |
Target: 5'- -uGCGUgGGAUGGCACCACcGACg-- -3' miRNA: 3'- acUGCGgCCUGUCGUGGUGuCUGguc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 9441 | 0.66 | 0.497444 |
Target: 5'- gUGACGCCuGcCAGCACCucgguggugaaaggGCAGAgCAc -3' miRNA: 3'- -ACUGCGGcCuGUCGUGG--------------UGUCUgGUc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 14416 | 0.67 | 0.460023 |
Target: 5'- aGcCGCCGGuCGGCcucacucaGCCaggGCAGACCAc -3' miRNA: 3'- aCuGCGGCCuGUCG--------UGG---UGUCUGGUc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 40293 | 0.67 | 0.460022 |
Target: 5'- -uGCGCCGGACGuugccGCGCUaACAGGCgCAa -3' miRNA: 3'- acUGCGGCCUGU-----CGUGG-UGUCUG-GUc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 2861 | 0.67 | 0.441394 |
Target: 5'- cUGGgGCCGGACGGCAUgACAucgcugcgcgaauauGCCGGu -3' miRNA: 3'- -ACUgCGGCCUGUCGUGgUGUc--------------UGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 375 | 0.67 | 0.440426 |
Target: 5'- -uGCGCCGGGaGGUugaagaacuGCgGCAGGCCAGc -3' miRNA: 3'- acUGCGGCCUgUCG---------UGgUGUCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 16063 | 0.69 | 0.384633 |
Target: 5'- gGGCGCgGcGGCAGguuacccauCACCACcgAGGCCAGa -3' miRNA: 3'- aCUGCGgC-CUGUC---------GUGGUG--UCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 13781 | 0.7 | 0.333724 |
Target: 5'- -uACGCCGGACcaccGUuCCGCcGACCAGa -3' miRNA: 3'- acUGCGGCCUGu---CGuGGUGuCUGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 4996 | 0.7 | 0.310184 |
Target: 5'- aGACGCCGGgagGCGGCACUggcaagcaACuGACCu- -3' miRNA: 3'- aCUGCGGCC---UGUCGUGG--------UGuCUGGuc -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 16939 | 0.7 | 0.295205 |
Target: 5'- aUGACuauGCCGGuauCAGCACCGguGGCguGu -3' miRNA: 3'- -ACUG---CGGCCu--GUCGUGGUguCUGguC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 12869 | 0.7 | 0.293008 |
Target: 5'- cGGCGguuaugucgguacaCCGGGCAGCAUgGCAGacaGCCGGu -3' miRNA: 3'- aCUGC--------------GGCCUGUCGUGgUGUC---UGGUC- -5' |
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2381 | 5' | -57.8 | NC_001416.1 | + | 756 | 0.73 | 0.202634 |
Target: 5'- -cGCGCCGGGCuucgcucacuguucaGGCcggaGCCACAGACCGc -3' miRNA: 3'- acUGCGGCCUG---------------UCG----UGGUGUCUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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