Results 1 - 20 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23810 | 3' | -54.3 | NC_005261.1 | + | 28788 | 0.66 | 0.949405 |
Target: 5'- cGCGGGCGCucGCGGCcGCgGCGGagGCAGc -3' miRNA: 3'- -CGUCCGUGc-UGUCGaCG-UGCU--UGUCc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 97756 | 0.66 | 0.949405 |
Target: 5'- gGCGGGCuCGGCGGCgcggccgGCAucgacuccCGAGCcccGGGc -3' miRNA: 3'- -CGUCCGuGCUGUCGa------CGU--------GCUUG---UCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 96953 | 0.66 | 0.949405 |
Target: 5'- cGCAucGGCGgGGCAGCcgccggGCGCGAuucacGCGGc -3' miRNA: 3'- -CGU--CCGUgCUGUCGa-----CGUGCU-----UGUCc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 59777 | 0.66 | 0.949405 |
Target: 5'- uGCucGGCcgcaGCGACGGCgGCGgGcGGCAGGc -3' miRNA: 3'- -CGu-CCG----UGCUGUCGaCGUgC-UUGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 38820 | 0.66 | 0.949405 |
Target: 5'- uCGGGCgGCGcCAGCU-CACGGACAc- -3' miRNA: 3'- cGUCCG-UGCuGUCGAcGUGCUUGUcc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 72143 | 0.66 | 0.949405 |
Target: 5'- cCGGGUGCGAC---UGCACGucCGGGg -3' miRNA: 3'- cGUCCGUGCUGucgACGUGCuuGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 103195 | 0.66 | 0.949405 |
Target: 5'- cGCGGuCACGcGCGGCgGCGCcuccuGCAGGa -3' miRNA: 3'- -CGUCcGUGC-UGUCGaCGUGcu---UGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 77173 | 0.66 | 0.949405 |
Target: 5'- gGCGGGCAUcGCAGggcacacguauCUGCagGCGAGCGcGGu -3' miRNA: 3'- -CGUCCGUGcUGUC-----------GACG--UGCUUGU-CC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 5631 | 0.66 | 0.948977 |
Target: 5'- uGC-GGCGCGACgaguaggggggggGGCggGCaACGAGgAGGg -3' miRNA: 3'- -CGuCCGUGCUG-------------UCGa-CG-UGCUUgUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 34469 | 0.66 | 0.945018 |
Target: 5'- cGgGGGCcccguaccuGCGGCGGgUGCugGAGUGGGu -3' miRNA: 3'- -CgUCCG---------UGCUGUCgACGugCUUGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 60345 | 0.66 | 0.945018 |
Target: 5'- uGC-GGCGCcGCGGCcGCGCGc-CAGGc -3' miRNA: 3'- -CGuCCGUGcUGUCGaCGUGCuuGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 40856 | 0.66 | 0.945018 |
Target: 5'- -aGGGCGCGuccgcgaaGGCcGCccCGAACAGGg -3' miRNA: 3'- cgUCCGUGCug------UCGaCGu-GCUUGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 127630 | 0.66 | 0.945018 |
Target: 5'- gGCcGGaCGCGACGGCggcgGCGCcGGgGGGc -3' miRNA: 3'- -CGuCC-GUGCUGUCGa---CGUGcUUgUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 97582 | 0.66 | 0.945018 |
Target: 5'- cGguGGCGCgGGCGGagcggGCG-GAGCGGGc -3' miRNA: 3'- -CguCCGUG-CUGUCga---CGUgCUUGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 56253 | 0.66 | 0.945018 |
Target: 5'- cCGGGCgugGGCAcGCUGCACGggUAc- -3' miRNA: 3'- cGUCCGug-CUGU-CGACGUGCuuGUcc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 108733 | 0.66 | 0.945018 |
Target: 5'- cGCGGGCcaGCGGCGGCgccGCgGCGuccGCGGc -3' miRNA: 3'- -CGUCCG--UGCUGUCGa--CG-UGCu--UGUCc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 48856 | 0.66 | 0.943655 |
Target: 5'- aGCAGGCccagcgcccgggccAUGGCGGCgcagccGC-CGAACAGc -3' miRNA: 3'- -CGUCCG--------------UGCUGUCGa-----CGuGCUUGUCc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 131877 | 0.66 | 0.943655 |
Target: 5'- aGCuGGCggccgccgccgcacGCGACGGCgcGCACccgcuGGACGGGc -3' miRNA: 3'- -CGuCCG--------------UGCUGUCGa-CGUG-----CUUGUCC- -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 98010 | 0.66 | 0.940389 |
Target: 5'- cGgGGGCGCuGGCGGCgagGCugGAgacgccGCGGu -3' miRNA: 3'- -CgUCCGUG-CUGUCGa--CGugCU------UGUCc -5' |
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23810 | 3' | -54.3 | NC_005261.1 | + | 80064 | 0.66 | 0.940389 |
Target: 5'- gGCGGGCGCgGGgGGCguggggGaCGCGGACcGGc -3' miRNA: 3'- -CGUCCGUG-CUgUCGa-----C-GUGCUUGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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