miRNA display CGI


Results 1 - 20 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 3' -54.3 NC_005261.1 + 77173 0.66 0.949405
Target:  5'- gGCGGGCAUcGCAGggcacacguauCUGCagGCGAGCGcGGu -3'
miRNA:   3'- -CGUCCGUGcUGUC-----------GACG--UGCUUGU-CC- -5'
23810 3' -54.3 NC_005261.1 + 103195 0.66 0.949405
Target:  5'- cGCGGuCACGcGCGGCgGCGCcuccuGCAGGa -3'
miRNA:   3'- -CGUCcGUGC-UGUCGaCGUGcu---UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 59777 0.66 0.949405
Target:  5'- uGCucGGCcgcaGCGACGGCgGCGgGcGGCAGGc -3'
miRNA:   3'- -CGu-CCG----UGCUGUCGaCGUgC-UUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 28788 0.66 0.949405
Target:  5'- cGCGGGCGCucGCGGCcGCgGCGGagGCAGc -3'
miRNA:   3'- -CGUCCGUGc-UGUCGaCG-UGCU--UGUCc -5'
23810 3' -54.3 NC_005261.1 + 38820 0.66 0.949405
Target:  5'- uCGGGCgGCGcCAGCU-CACGGACAc- -3'
miRNA:   3'- cGUCCG-UGCuGUCGAcGUGCUUGUcc -5'
23810 3' -54.3 NC_005261.1 + 72143 0.66 0.949405
Target:  5'- cCGGGUGCGAC---UGCACGucCGGGg -3'
miRNA:   3'- cGUCCGUGCUGucgACGUGCuuGUCC- -5'
23810 3' -54.3 NC_005261.1 + 97756 0.66 0.949405
Target:  5'- gGCGGGCuCGGCGGCgcggccgGCAucgacuccCGAGCcccGGGc -3'
miRNA:   3'- -CGUCCGuGCUGUCGa------CGU--------GCUUG---UCC- -5'
23810 3' -54.3 NC_005261.1 + 96953 0.66 0.949405
Target:  5'- cGCAucGGCGgGGCAGCcgccggGCGCGAuucacGCGGc -3'
miRNA:   3'- -CGU--CCGUgCUGUCGa-----CGUGCU-----UGUCc -5'
23810 3' -54.3 NC_005261.1 + 5631 0.66 0.948977
Target:  5'- uGC-GGCGCGACgaguaggggggggGGCggGCaACGAGgAGGg -3'
miRNA:   3'- -CGuCCGUGCUG-------------UCGa-CG-UGCUUgUCC- -5'
23810 3' -54.3 NC_005261.1 + 108733 0.66 0.945018
Target:  5'- cGCGGGCcaGCGGCGGCgccGCgGCGuccGCGGc -3'
miRNA:   3'- -CGUCCG--UGCUGUCGa--CG-UGCu--UGUCc -5'
23810 3' -54.3 NC_005261.1 + 34469 0.66 0.945018
Target:  5'- cGgGGGCcccguaccuGCGGCGGgUGCugGAGUGGGu -3'
miRNA:   3'- -CgUCCG---------UGCUGUCgACGugCUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 56253 0.66 0.945018
Target:  5'- cCGGGCgugGGCAcGCUGCACGggUAc- -3'
miRNA:   3'- cGUCCGug-CUGU-CGACGUGCuuGUcc -5'
23810 3' -54.3 NC_005261.1 + 40856 0.66 0.945018
Target:  5'- -aGGGCGCGuccgcgaaGGCcGCccCGAACAGGg -3'
miRNA:   3'- cgUCCGUGCug------UCGaCGu-GCUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 97582 0.66 0.945018
Target:  5'- cGguGGCGCgGGCGGagcggGCG-GAGCGGGc -3'
miRNA:   3'- -CguCCGUG-CUGUCga---CGUgCUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 127630 0.66 0.945018
Target:  5'- gGCcGGaCGCGACGGCggcgGCGCcGGgGGGc -3'
miRNA:   3'- -CGuCC-GUGCUGUCGa---CGUGcUUgUCC- -5'
23810 3' -54.3 NC_005261.1 + 60345 0.66 0.945018
Target:  5'- uGC-GGCGCcGCGGCcGCGCGc-CAGGc -3'
miRNA:   3'- -CGuCCGUGcUGUCGaCGUGCuuGUCC- -5'
23810 3' -54.3 NC_005261.1 + 48856 0.66 0.943655
Target:  5'- aGCAGGCccagcgcccgggccAUGGCGGCgcagccGC-CGAACAGc -3'
miRNA:   3'- -CGUCCG--------------UGCUGUCGa-----CGuGCUUGUCc -5'
23810 3' -54.3 NC_005261.1 + 131877 0.66 0.943655
Target:  5'- aGCuGGCggccgccgccgcacGCGACGGCgcGCACccgcuGGACGGGc -3'
miRNA:   3'- -CGuCCG--------------UGCUGUCGa-CGUG-----CUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 1886 0.66 0.940389
Target:  5'- aGCAcGGCGCGcgcCAGC-GCGCGccgcuCAGGc -3'
miRNA:   3'- -CGU-CCGUGCu--GUCGaCGUGCuu---GUCC- -5'
23810 3' -54.3 NC_005261.1 + 98010 0.66 0.940389
Target:  5'- cGgGGGCGCuGGCGGCgagGCugGAgacgccGCGGu -3'
miRNA:   3'- -CgUCCGUG-CUGUCGa--CGugCU------UGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.