miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 3' -54.3 NC_005261.1 + 53979 0.66 0.930397
Target:  5'- -aAGaGCGCGGCgAGCUccagcGCGCGGcgcACAGGc -3'
miRNA:   3'- cgUC-CGUGCUG-UCGA-----CGUGCU---UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 97417 0.66 0.940389
Target:  5'- gGCGGGCGCGcCGGgcCUGCccuUGGGCGcGGg -3'
miRNA:   3'- -CGUCCGUGCuGUC--GACGu--GCUUGU-CC- -5'
23810 3' -54.3 NC_005261.1 + 1886 0.66 0.940389
Target:  5'- aGCAcGGCGCGcgcCAGC-GCGCGccgcuCAGGc -3'
miRNA:   3'- -CGU-CCGUGCu--GUCGaCGUGCuu---GUCC- -5'
23810 3' -54.3 NC_005261.1 + 4451 0.66 0.940389
Target:  5'- aGCGGGCccuccaGCGGCGGCggcccgucGCGCGGcgccGCGGc -3'
miRNA:   3'- -CGUCCG------UGCUGUCGa-------CGUGCU----UGUCc -5'
23810 3' -54.3 NC_005261.1 + 136497 0.66 0.935516
Target:  5'- aGCAgcucGGCGcCGACGcCUGCuccgGCGAACAGa -3'
miRNA:   3'- -CGU----CCGU-GCUGUcGACG----UGCUUGUCc -5'
23810 3' -54.3 NC_005261.1 + 134374 0.66 0.930397
Target:  5'- gGCGGcGCcgcugGCGACGGCgagaGCGgGAuCAGGa -3'
miRNA:   3'- -CGUC-CG-----UGCUGUCGa---CGUgCUuGUCC- -5'
23810 3' -54.3 NC_005261.1 + 59953 0.66 0.935516
Target:  5'- cGCA-GCGCGGC-GC-GCGUGAACGGGu -3'
miRNA:   3'- -CGUcCGUGCUGuCGaCGUGCUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 83844 0.66 0.940389
Target:  5'- gGCGGGcCGCGGCcccGCUGgGCuGGGCcGGg -3'
miRNA:   3'- -CGUCC-GUGCUGu--CGACgUG-CUUGuCC- -5'
23810 3' -54.3 NC_005261.1 + 97812 0.66 0.939913
Target:  5'- cGCcGGCGCccccgcaGACGGCgGCAaaAACGGGg -3'
miRNA:   3'- -CGuCCGUG-------CUGUCGaCGUgcUUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 99541 0.66 0.930397
Target:  5'- -aGGGCGCGuccaGGCgGCGCGc-CAGGa -3'
miRNA:   3'- cgUCCGUGCug--UCGaCGUGCuuGUCC- -5'
23810 3' -54.3 NC_005261.1 + 98010 0.66 0.940389
Target:  5'- cGgGGGCGCuGGCGGCgagGCugGAgacgccGCGGu -3'
miRNA:   3'- -CgUCCGUG-CUGUCGa--CGugCU------UGUCc -5'
23810 3' -54.3 NC_005261.1 + 103195 0.66 0.949405
Target:  5'- cGCGGuCACGcGCGGCgGCGCcuccuGCAGGa -3'
miRNA:   3'- -CGUCcGUGC-UGUCGaCGUGcu---UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 135656 0.66 0.935516
Target:  5'- cGCGGGCGCgGGCGGCccucGCuCGAGgAGc -3'
miRNA:   3'- -CGUCCGUG-CUGUCGa---CGuGCUUgUCc -5'
23810 3' -54.3 NC_005261.1 + 67651 0.66 0.935516
Target:  5'- cGCGGGCcgcccguccGCGcGCGGCgccagGCGCGGugAGc -3'
miRNA:   3'- -CGUCCG---------UGC-UGUCGa----CGUGCUugUCc -5'
23810 3' -54.3 NC_005261.1 + 133542 0.66 0.935516
Target:  5'- -gGGGCGCG-CAGCgcaGCAUGcugcuCGGGg -3'
miRNA:   3'- cgUCCGUGCuGUCGa--CGUGCuu---GUCC- -5'
23810 3' -54.3 NC_005261.1 + 45971 0.66 0.935516
Target:  5'- aGCAuGCGCGcCAGCUcuugcaGCACGGGCGc- -3'
miRNA:   3'- -CGUcCGUGCuGUCGA------CGUGCUUGUcc -5'
23810 3' -54.3 NC_005261.1 + 80064 0.66 0.940389
Target:  5'- gGCGGGCGCgGGgGGCguggggGaCGCGGACcGGc -3'
miRNA:   3'- -CGUCCGUG-CUgUCGa-----C-GUGCUUGuCC- -5'
23810 3' -54.3 NC_005261.1 + 117439 0.66 0.940389
Target:  5'- -gGGGUucCGGCGGCUGCugcagaagguGCG-GCAGGu -3'
miRNA:   3'- cgUCCGu-GCUGUCGACG----------UGCuUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 53937 0.66 0.930397
Target:  5'- aGCAcGaGCGCGGCGcGCcGCGCucGCGGGu -3'
miRNA:   3'- -CGU-C-CGUGCUGU-CGaCGUGcuUGUCC- -5'
23810 3' -54.3 NC_005261.1 + 34921 0.66 0.930397
Target:  5'- -gGGGCGCGGCcacgcggggggcGGCcgGCGCGAccCGGGc -3'
miRNA:   3'- cgUCCGUGCUG------------UCGa-CGUGCUu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.