miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 3' -54.3 NC_005261.1 + 244 0.72 0.680654
Target:  5'- aGCGGGCccggcugcgGCGGCGGCUGCgGCG-GCGGc -3'
miRNA:   3'- -CGUCCG---------UGCUGUCGACG-UGCuUGUCc -5'
23810 3' -54.3 NC_005261.1 + 322 0.67 0.907457
Target:  5'- gGCGGcuGCgGCGGCGGCUGCgGCGGcccGCAGc -3'
miRNA:   3'- -CGUC--CG-UGCUGUCGACG-UGCU---UGUCc -5'
23810 3' -54.3 NC_005261.1 + 382 0.67 0.907457
Target:  5'- cGguGGCgGCGGCGGCgGCgGCGGcgGCAGcGg -3'
miRNA:   3'- -CguCCG-UGCUGUCGaCG-UGCU--UGUC-C- -5'
23810 3' -54.3 NC_005261.1 + 456 0.71 0.741387
Target:  5'- cGgGGGcCGCGACGGCcgGCGgGAuggcGCGGGg -3'
miRNA:   3'- -CgUCC-GUGCUGUCGa-CGUgCU----UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 1046 0.69 0.837084
Target:  5'- gGCGGGCgGCGGCguuAGCgGCGCGGGgggcuggccccgcucCAGGg -3'
miRNA:   3'- -CGUCCG-UGCUG---UCGaCGUGCUU---------------GUCC- -5'
23810 3' -54.3 NC_005261.1 + 1405 0.7 0.760947
Target:  5'- cGCGGcCGCGGCGGCgGCGgGGGCGGc -3'
miRNA:   3'- -CGUCcGUGCUGUCGaCGUgCUUGUCc -5'
23810 3' -54.3 NC_005261.1 + 1730 0.69 0.807619
Target:  5'- aCGGGCACcGCGG-UGCGCGGGCccAGGc -3'
miRNA:   3'- cGUCCGUGcUGUCgACGUGCUUG--UCC- -5'
23810 3' -54.3 NC_005261.1 + 1886 0.66 0.940389
Target:  5'- aGCAcGGCGCGcgcCAGC-GCGCGccgcuCAGGc -3'
miRNA:   3'- -CGU-CCGUGCu--GUCGaCGUGCuu---GUCC- -5'
23810 3' -54.3 NC_005261.1 + 2221 0.66 0.935516
Target:  5'- aGCAGGUGCGAgAGCccgccgcGCACcGGCGGc -3'
miRNA:   3'- -CGUCCGUGCUgUCGa------CGUGcUUGUCc -5'
23810 3' -54.3 NC_005261.1 + 2386 0.71 0.741387
Target:  5'- aGCGGcGCGCuGGCGGCgaGCGCGcccGCGGGc -3'
miRNA:   3'- -CGUC-CGUG-CUGUCGa-CGUGCu--UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 2652 0.69 0.816497
Target:  5'- gGCGGGCAgCGGCGGCUcccGC-CGcGCuGGg -3'
miRNA:   3'- -CGUCCGU-GCUGUCGA---CGuGCuUGuCC- -5'
23810 3' -54.3 NC_005261.1 + 3557 0.69 0.816497
Target:  5'- gGCGGGCGCGGCGccGCUaagGCGCGcGCGc- -3'
miRNA:   3'- -CGUCCGUGCUGU--CGA---CGUGCuUGUcc -5'
23810 3' -54.3 NC_005261.1 + 3681 0.7 0.780035
Target:  5'- gGCAGGcCGCGGCccGCUGCAgccgaGAGCAccGGg -3'
miRNA:   3'- -CGUCC-GUGCUGu-CGACGUg----CUUGU--CC- -5'
23810 3' -54.3 NC_005261.1 + 3830 0.67 0.901111
Target:  5'- cGCGGGCccgggcgcugGCGGCAGCgGCGCcGGCGc- -3'
miRNA:   3'- -CGUCCG----------UGCUGUCGaCGUGcUUGUcc -5'
23810 3' -54.3 NC_005261.1 + 3879 0.72 0.659979
Target:  5'- aGCAcGGCGCG-CAGCUcggcgaGCGCGGcGCGGGc -3'
miRNA:   3'- -CGU-CCGUGCuGUCGA------CGUGCU-UGUCC- -5'
23810 3' -54.3 NC_005261.1 + 4023 0.68 0.861249
Target:  5'- cGCAGGCcgccacguGCGGCAGCgcccacagcgcguucUGCGCGGcCAuGGc -3'
miRNA:   3'- -CGUCCG--------UGCUGUCG---------------ACGUGCUuGU-CC- -5'
23810 3' -54.3 NC_005261.1 + 4157 0.84 0.16202
Target:  5'- aGCAGGCGCGcCAGCUGCAgGucCGGGc -3'
miRNA:   3'- -CGUCCGUGCuGUCGACGUgCuuGUCC- -5'
23810 3' -54.3 NC_005261.1 + 4400 0.68 0.858134
Target:  5'- cCGGGCggcgGCGGCGcGCUGC-CGGGcCAGGc -3'
miRNA:   3'- cGUCCG----UGCUGU-CGACGuGCUU-GUCC- -5'
23810 3' -54.3 NC_005261.1 + 4451 0.66 0.940389
Target:  5'- aGCGGGCccuccaGCGGCGGCggcccgucGCGCGGcgccGCGGc -3'
miRNA:   3'- -CGUCCG------UGCUGUCGa-------CGUGCU----UGUCc -5'
23810 3' -54.3 NC_005261.1 + 4526 0.7 0.798576
Target:  5'- cGCGGGCGCcGCGGCgaggGCGcCGGGCccuGGc -3'
miRNA:   3'- -CGUCCGUGcUGUCGa---CGU-GCUUGu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.