miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 101283 0.66 0.97366
Target:  5'- --cUCCAUgggccCGcGGUCGUCGAugcGCGCCg -3'
miRNA:   3'- gcaAGGUGu----GCuCCAGUAGCU---CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 120220 0.67 0.967832
Target:  5'- gGUUCCAgaGCGccGaCGUgGAGCGCCg -3'
miRNA:   3'- gCAAGGUg-UGCucCaGUAgCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 2285 0.67 0.960065
Target:  5'- gCGgcgCCGCcaGCGccuccccgggcagcGGGUCGUaGAGCACCa -3'
miRNA:   3'- -GCaa-GGUG--UGC--------------UCCAGUAgCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 123537 0.67 0.957465
Target:  5'- uGUaCCGCGCGAGcGUgcCcUCGcGCACCg -3'
miRNA:   3'- gCAaGGUGUGCUC-CA--GuAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 86090 0.67 0.957465
Target:  5'- --cUCCGCGCGuucUCGUCG-GCGCCc -3'
miRNA:   3'- gcaAGGUGUGCuccAGUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 110601 0.67 0.957465
Target:  5'- gCGUUCCugGaCGuGGaCGcCGAGCugCg -3'
miRNA:   3'- -GCAAGGugU-GCuCCaGUaGCUCGugG- -5'
23811 5' -52.7 NC_005261.1 + 98294 0.67 0.957465
Target:  5'- gCGcgUCCGCGgccuCGGGGg---CGGGCGCCg -3'
miRNA:   3'- -GCa-AGGUGU----GCUCCaguaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 134358 0.67 0.953552
Target:  5'- gCGccgCCGCGCGGGGgg--CG-GCGCCg -3'
miRNA:   3'- -GCaa-GGUGUGCUCCaguaGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 108073 0.67 0.953552
Target:  5'- uGUagUGCGCGAGGUaGUCG-GCGCUg -3'
miRNA:   3'- gCAagGUGUGCUCCAgUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 72828 0.67 0.961145
Target:  5'- aGggCCGCAaGGcGGUCGgccaGGGCGCCa -3'
miRNA:   3'- gCaaGGUGUgCU-CCAGUag--CUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 1499 0.67 0.961145
Target:  5'- ---aCCGcCGCGGccGGcagcUCGUCGGGCGCCa -3'
miRNA:   3'- gcaaGGU-GUGCU--CC----AGUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 126929 0.67 0.961145
Target:  5'- cCGUUCCAgcaGCGcGGcCAg-GGGCGCCg -3'
miRNA:   3'- -GCAAGGUg--UGCuCCaGUagCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 114596 0.67 0.967832
Target:  5'- uGUUCCGCGaggcUGuGGagAUUGAGCGCg -3'
miRNA:   3'- gCAAGGUGU----GCuCCagUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 115143 0.67 0.967832
Target:  5'- uGUcgUACACGAgccGGggGUCGGGCGCCu -3'
miRNA:   3'- gCAagGUGUGCU---CCagUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 130079 0.67 0.967832
Target:  5'- uGUUCCGCugGcagauguaguAGGUCcgCGccagcgacuGCGCCu -3'
miRNA:   3'- gCAAGGUGugC----------UCCAGuaGCu--------CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 111005 0.67 0.964599
Target:  5'- aCGcugCCGCACGAcucgccgcgGGUCAccugccgcagCGAGCGCUa -3'
miRNA:   3'- -GCaa-GGUGUGCU---------CCAGUa---------GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 28565 0.67 0.964599
Target:  5'- gCGgcCCGCcgggcCGAGG-CGcgCGAGCGCCg -3'
miRNA:   3'- -GCaaGGUGu----GCUCCaGUa-GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 76044 0.67 0.964599
Target:  5'- gCGcgCCAUcaGCGuGGcCggCGGGCGCCa -3'
miRNA:   3'- -GCaaGGUG--UGCuCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 47110 0.67 0.964599
Target:  5'- cCG-UCCgugaggacguGCGCGuccAGGUCGUCGcgcacAGCGCCg -3'
miRNA:   3'- -GCaAGG----------UGUGC---UCCAGUAGC-----UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 42318 0.67 0.964599
Target:  5'- aGUagUACACGAGGUCG-CGGaacuGCACg -3'
miRNA:   3'- gCAagGUGUGCUCCAGUaGCU----CGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.