miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 47110 0.67 0.964599
Target:  5'- cCG-UCCgugaggacguGCGCGuccAGGUCGUCGcgcacAGCGCCg -3'
miRNA:   3'- -GCaAGG----------UGUGC---UCCAGUAGC-----UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 53762 0.66 0.97366
Target:  5'- aCGUacgCCGCGCGgcaaacgaccGGGUCGUCGccguCGCCu -3'
miRNA:   3'- -GCAa--GGUGUGC----------UCCAGUAGCuc--GUGG- -5'
23811 5' -52.7 NC_005261.1 + 55947 0.69 0.91356
Target:  5'- cCGUuuggcUCCccgGCGCcGGGUCucccgCGAGCGCCg -3'
miRNA:   3'- -GCA-----AGG---UGUGcUCCAGua---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 56722 0.66 0.97868
Target:  5'- gGgaCCACGcCGAGcG-CAUCG-GCGCCu -3'
miRNA:   3'- gCaaGGUGU-GCUC-CaGUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 57713 0.69 0.907457
Target:  5'- uCGUccaUCUGCACGAGGUa---GAgGCGCCg -3'
miRNA:   3'- -GCA---AGGUGUGCUCCAguagCU-CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 59236 0.66 0.982955
Target:  5'- cCGggCCACgaGCGAGag---CGGGCGCCg -3'
miRNA:   3'- -GCaaGGUG--UGCUCcaguaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 63398 0.72 0.807619
Target:  5'- cCGUggUCgaACAUGAGGUCGUCG-GCGuCCg -3'
miRNA:   3'- -GCA--AGg-UGUGCUCCAGUAGCuCGU-GG- -5'
23811 5' -52.7 NC_005261.1 + 64823 0.71 0.816497
Target:  5'- gCGcgCCGCGCGccGGGUCcgCGcgcugcAGCGCCa -3'
miRNA:   3'- -GCaaGGUGUGC--UCCAGuaGC------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 65575 0.7 0.880647
Target:  5'- aGUgCCGCACcuGGUCcgCGAGCuCCu -3'
miRNA:   3'- gCAaGGUGUGcuCCAGuaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 67063 0.66 0.982955
Target:  5'- gCGggCgCGCGCGGGGgcUCGcUCGGGCGguCCa -3'
miRNA:   3'- -GCaaG-GUGUGCUCC--AGU-AGCUCGU--GG- -5'
23811 5' -52.7 NC_005261.1 + 68640 0.71 0.842062
Target:  5'- ---cCCGCGacCGAGGUCAUCGu-CACCg -3'
miRNA:   3'- gcaaGGUGU--GCUCCAGUAGCucGUGG- -5'
23811 5' -52.7 NC_005261.1 + 71725 0.68 0.935516
Target:  5'- --gUCC-CGCGAcGUCGUCGAGaCGCUc -3'
miRNA:   3'- gcaAGGuGUGCUcCAGUAGCUC-GUGG- -5'
23811 5' -52.7 NC_005261.1 + 72828 0.67 0.961145
Target:  5'- aGggCCGCAaGGcGGUCGgccaGGGCGCCa -3'
miRNA:   3'- gCaaGGUGUgCU-CCAGUag--CUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 72971 0.71 0.8502
Target:  5'- cCGccgCCGCG-GGGGUCcgCGAGCGCg -3'
miRNA:   3'- -GCaa-GGUGUgCUCCAGuaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 73189 0.7 0.887702
Target:  5'- gGUgcaCACgACGAGGUUGgcccCGGGCGCCu -3'
miRNA:   3'- gCAag-GUG-UGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 76044 0.67 0.964599
Target:  5'- gCGcgCCAUcaGCGuGGcCggCGGGCGCCa -3'
miRNA:   3'- -GCaaGGUG--UGCuCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 79052 0.66 0.97085
Target:  5'- gCGUcgUCCuugagcgcGCGCGuGGUgAUCGGGUACa -3'
miRNA:   3'- -GCA--AGG--------UGUGCuCCAgUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 80485 0.66 0.982955
Target:  5'- uCGcgCCACuu--GGUCAgCGAGCACa -3'
miRNA:   3'- -GCaaGGUGugcuCCAGUaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 83302 0.69 0.919419
Target:  5'- ---gCUGCGCGGGGUCGugcagcUCGGGCggcGCCa -3'
miRNA:   3'- gcaaGGUGUGCUCCAGU------AGCUCG---UGG- -5'
23811 5' -52.7 NC_005261.1 + 83622 0.66 0.97085
Target:  5'- gCGUggUCCAgCGCGAGGUCcagCGcGUACg -3'
miRNA:   3'- -GCA--AGGU-GUGCUCCAGua-GCuCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.