miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 106457 0.77 0.526245
Target:  5'- aCG-UCCGCGCGGGcGUCcaaGAGCGCCg -3'
miRNA:   3'- -GCaAGGUGUGCUC-CAGuagCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 106993 0.66 0.97366
Target:  5'- ---aCCGCGuCGgccAGGUCcgcCGAGCGCCa -3'
miRNA:   3'- gcaaGGUGU-GC---UCCAGua-GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 108073 0.67 0.953552
Target:  5'- uGUagUGCGCGAGGUaGUCG-GCGCUg -3'
miRNA:   3'- gCAagGUGUGCUCCAgUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 110601 0.67 0.957465
Target:  5'- gCGUUCCugGaCGuGGaCGcCGAGCugCg -3'
miRNA:   3'- -GCAAGGugU-GCuCCaGUaGCUCGugG- -5'
23811 5' -52.7 NC_005261.1 + 110922 0.71 0.842062
Target:  5'- uGUUCCugcCGCGcuGGG-CAcCGAGCGCCg -3'
miRNA:   3'- gCAAGGu--GUGC--UCCaGUaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 111005 0.67 0.964599
Target:  5'- aCGcugCCGCACGAcucgccgcgGGUCAccugccgcagCGAGCGCUa -3'
miRNA:   3'- -GCaa-GGUGUGCU---------CCAGUa---------GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 111700 0.68 0.935015
Target:  5'- uCGUggaCCGCAUGAaggcgcagucgcgGGUCGaCGAGCGCg -3'
miRNA:   3'- -GCAa--GGUGUGCU-------------CCAGUaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 113037 0.68 0.949405
Target:  5'- gCGggCCGCGCGcGG-CGUgGcGCGCCa -3'
miRNA:   3'- -GCaaGGUGUGCuCCaGUAgCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 114596 0.67 0.967832
Target:  5'- uGUUCCGCGaggcUGuGGagAUUGAGCGCg -3'
miRNA:   3'- gCAAGGUGU----GCuCCagUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 115143 0.67 0.967832
Target:  5'- uGUcgUACACGAgccGGggGUCGGGCGCCu -3'
miRNA:   3'- gCAagGUGUGCU---CCagUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 116236 0.7 0.865095
Target:  5'- aCGUUCCACAggucgacggcgauUGGGGUCAUCacGC-CCg -3'
miRNA:   3'- -GCAAGGUGU-------------GCUCCAGUAGcuCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 120220 0.67 0.967832
Target:  5'- gGUUCCAgaGCGccGaCGUgGAGCGCCg -3'
miRNA:   3'- gCAAGGUg-UGCucCaGUAgCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 123537 0.67 0.957465
Target:  5'- uGUaCCGCGCGAGcGUgcCcUCGcGCACCg -3'
miRNA:   3'- gCAaGGUGUGCUC-CA--GuAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 125278 0.74 0.659979
Target:  5'- gGggCCGCugGAaGUCAggccgCGGGCGCCg -3'
miRNA:   3'- gCaaGGUGugCUcCAGUa----GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 126929 0.67 0.961145
Target:  5'- cCGUUCCAgcaGCGcGGcCAg-GGGCGCCg -3'
miRNA:   3'- -GCAAGGUg--UGCuCCaGUagCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 128108 0.69 0.901111
Target:  5'- gCGgcgCgGCGCGGGGUCGggcCGAGUGCg -3'
miRNA:   3'- -GCaa-GgUGUGCUCCAGUa--GCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 129363 0.7 0.872623
Target:  5'- -cUUCCGCGCGcGGGUCGcgcggcuUCGGGUccACCg -3'
miRNA:   3'- gcAAGGUGUGC-UCCAGU-------AGCUCG--UGG- -5'
23811 5' -52.7 NC_005261.1 + 129612 0.66 0.982955
Target:  5'- -aUUUCGCgGCGGGG---UCGGGCGCCu -3'
miRNA:   3'- gcAAGGUG-UGCUCCaguAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 130079 0.67 0.967832
Target:  5'- uGUUCCGCugGcagauguaguAGGUCcgCGccagcgacuGCGCCu -3'
miRNA:   3'- gCAAGGUGugC----------UCCAGuaGCu--------CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 134358 0.67 0.953552
Target:  5'- gCGccgCCGCGCGGGGgg--CG-GCGCCg -3'
miRNA:   3'- -GCaa-GGUGUGCUCCaguaGCuCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.