Results 61 - 80 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 47110 | 0.67 | 0.964599 |
Target: 5'- cCG-UCCgugaggacguGCGCGuccAGGUCGUCGcgcacAGCGCCg -3' miRNA: 3'- -GCaAGG----------UGUGC---UCCAGUAGC-----UCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 44336 | 0.7 | 0.873364 |
Target: 5'- gGggCUgggGCACGAGGUCAUCGA-CAUa -3' miRNA: 3'- gCaaGG---UGUGCUCCAGUAGCUcGUGg -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 42318 | 0.67 | 0.964599 |
Target: 5'- aGUagUACACGAGGUCG-CGGaacuGCACg -3' miRNA: 3'- gCAagGUGUGCUCCAGUaGCU----CGUGg -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 41259 | 0.73 | 0.731454 |
Target: 5'- gCGUacUCCAC-CGAGGUC-UCGcucuGCGCCc -3' miRNA: 3'- -GCA--AGGUGuGCUCCAGuAGCu---CGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 41016 | 0.77 | 0.496583 |
Target: 5'- aGggCCGCgaagACGAGGUCGUCGucguuguccccGGCGCCg -3' miRNA: 3'- gCaaGGUG----UGCUCCAGUAGC-----------UCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 37526 | 0.74 | 0.670333 |
Target: 5'- uCGgccugCCGCACGAGGUC--CGcGCGCCg -3' miRNA: 3'- -GCaa---GGUGUGCUCCAGuaGCuCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 35772 | 0.71 | 0.8502 |
Target: 5'- uCGggCCgagACAgGAGGcCcgCGGGCGCCa -3' miRNA: 3'- -GCaaGG---UGUgCUCCaGuaGCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 33760 | 0.66 | 0.982955 |
Target: 5'- cCGggCCcgcuCGCGGGGcccgCggCGAGCGCUg -3' miRNA: 3'- -GCaaGGu---GUGCUCCa---GuaGCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 33482 | 0.76 | 0.577031 |
Target: 5'- cCGggCCcgcuCGCGGGGcCcgCGAGCACCa -3' miRNA: 3'- -GCaaGGu---GUGCUCCaGuaGCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 32141 | 0.66 | 0.980907 |
Target: 5'- ---aCCGCugGGGG-C-UCGGcGCGCCg -3' miRNA: 3'- gcaaGGUGugCUCCaGuAGCU-CGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 31442 | 0.68 | 0.949405 |
Target: 5'- gCGgcgCCGCccgGCGAGGa---CGAGCGCCg -3' miRNA: 3'- -GCaa-GGUG---UGCUCCaguaGCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 31303 | 0.74 | 0.711333 |
Target: 5'- cCGccgCCGCGCGGGGcCcgCGGGCGCg -3' miRNA: 3'- -GCaa-GGUGUGCUCCaGuaGCUCGUGg -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 28565 | 0.67 | 0.964599 |
Target: 5'- gCGgcCCGCcgggcCGAGG-CGcgCGAGCGCCg -3' miRNA: 3'- -GCaaGGUGu----GCUCCaGUa-GCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 25035 | 0.7 | 0.865858 |
Target: 5'- gCGUUCU-CACGuGGUCG-CGGGCcCCa -3' miRNA: 3'- -GCAAGGuGUGCuCCAGUaGCUCGuGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 22696 | 0.69 | 0.91356 |
Target: 5'- aCGggCCcgGCgACGAGGcCGUCGAGgaGCCg -3' miRNA: 3'- -GCaaGG--UG-UGCUCCaGUAGCUCg-UGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 11854 | 0.69 | 0.907457 |
Target: 5'- gCGUUCgcgaGCGCGAGcGUCAgcugcggggCGAGC-CCg -3' miRNA: 3'- -GCAAGg---UGUGCUC-CAGUa--------GCUCGuGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 5217 | 0.66 | 0.973388 |
Target: 5'- --gUCCGCggacucgAUGAGGUCGuacaggUCGAGCgugGCCg -3' miRNA: 3'- gcaAGGUG-------UGCUCCAGU------AGCUCG---UGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 3455 | 0.68 | 0.940389 |
Target: 5'- gCGggCCGcCGCGccGcgCGUCGAGUACCg -3' miRNA: 3'- -GCaaGGU-GUGCucCa-GUAGCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 2449 | 0.7 | 0.873364 |
Target: 5'- aGcgCCu--CGGGGUCGaaggCGAGCGCCg -3' miRNA: 3'- gCaaGGuguGCUCCAGUa---GCUCGUGG- -5' |
|||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 2285 | 0.67 | 0.960065 |
Target: 5'- gCGgcgCCGCcaGCGccuccccgggcagcGGGUCGUaGAGCACCa -3' miRNA: 3'- -GCaa-GGUG--UGC--------------UCCAGUAgCUCGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home