miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 37526 0.74 0.670333
Target:  5'- uCGgccugCCGCACGAGGUC--CGcGCGCCg -3'
miRNA:   3'- -GCaa---GGUGUGCUCCAGuaGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 125278 0.74 0.659979
Target:  5'- gGggCCGCugGAaGUCAggccgCGGGCGCCg -3'
miRNA:   3'- gCaaGGUGugCUcCAGUa----GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 33482 0.76 0.577031
Target:  5'- cCGggCCcgcuCGCGGGGcCcgCGAGCACCa -3'
miRNA:   3'- -GCaaGGu---GUGCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 104176 0.77 0.546386
Target:  5'- gGcgCCGCGCGcGGGUCGUCGGGCGg- -3'
miRNA:   3'- gCaaGGUGUGC-UCCAGUAGCUCGUgg -5'
23811 5' -52.7 NC_005261.1 + 106457 0.77 0.526245
Target:  5'- aCG-UCCGCGCGGGcGUCcaaGAGCGCCg -3'
miRNA:   3'- -GCaAGGUGUGCUC-CAGuagCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 64823 0.71 0.816497
Target:  5'- gCGcgCCGCGCGccGGGUCcgCGcgcugcAGCGCCa -3'
miRNA:   3'- -GCaaGGUGUGC--UCCAGuaGC------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 110922 0.71 0.842062
Target:  5'- uGUUCCugcCGCGcuGGG-CAcCGAGCGCCg -3'
miRNA:   3'- gCAAGGu--GUGC--UCCaGUaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 99881 0.7 0.894525
Target:  5'- cCGcUCgGCGCGAGGgCGUUGAcCGCCa -3'
miRNA:   3'- -GCaAGgUGUGCUCCaGUAGCUcGUGG- -5'
23811 5' -52.7 NC_005261.1 + 73189 0.7 0.887702
Target:  5'- gGUgcaCACgACGAGGUUGgcccCGGGCGCCu -3'
miRNA:   3'- gCAag-GUG-UGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 65575 0.7 0.880647
Target:  5'- aGUgCCGCACcuGGUCcgCGAGCuCCu -3'
miRNA:   3'- gCAaGGUGUGcuCCAGuaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 97006 0.7 0.873364
Target:  5'- gCGcgCCAUugGgcGGGcCGUCGGGCGCg -3'
miRNA:   3'- -GCaaGGUGugC--UCCaGUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 44336 0.7 0.873364
Target:  5'- gGggCUgggGCACGAGGUCAUCGA-CAUa -3'
miRNA:   3'- gCaaGG---UGUGCUCCAGUAGCUcGUGg -5'
23811 5' -52.7 NC_005261.1 + 2449 0.7 0.873364
Target:  5'- aGcgCCu--CGGGGUCGaaggCGAGCGCCg -3'
miRNA:   3'- gCaaGGuguGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 129363 0.7 0.872623
Target:  5'- -cUUCCGCGCGcGGGUCGcgcggcuUCGGGUccACCg -3'
miRNA:   3'- gcAAGGUGUGC-UCCAGU-------AGCUCG--UGG- -5'
23811 5' -52.7 NC_005261.1 + 25035 0.7 0.865858
Target:  5'- gCGUUCU-CACGuGGUCG-CGGGCcCCa -3'
miRNA:   3'- -GCAAGGuGUGCuCCAGUaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 116236 0.7 0.865095
Target:  5'- aCGUUCCACAggucgacggcgauUGGGGUCAUCacGC-CCg -3'
miRNA:   3'- -GCAAGGUGU-------------GCUCCAGUAGcuCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 85273 0.7 0.858134
Target:  5'- ---aCCACugGGGGUuaggCGUCGGGCucCCg -3'
miRNA:   3'- gcaaGGUGugCUCCA----GUAGCUCGu-GG- -5'
23811 5' -52.7 NC_005261.1 + 72971 0.71 0.8502
Target:  5'- cCGccgCCGCG-GGGGUCcgCGAGCGCg -3'
miRNA:   3'- -GCaa-GGUGUgCUCCAGuaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 35772 0.71 0.8502
Target:  5'- uCGggCCgagACAgGAGGcCcgCGGGCGCCa -3'
miRNA:   3'- -GCaaGG---UGUgCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 68640 0.71 0.842062
Target:  5'- ---cCCGCGacCGAGGUCAUCGu-CACCg -3'
miRNA:   3'- gcaaGGUGU--GCUCCAGUAGCucGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.