miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 41016 0.77 0.496583
Target:  5'- aGggCCGCgaagACGAGGUCGUCGucguuguccccGGCGCCg -3'
miRNA:   3'- gCaaGGUG----UGCUCCAGUAGC-----------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 106457 0.77 0.526245
Target:  5'- aCG-UCCGCGCGGGcGUCcaaGAGCGCCg -3'
miRNA:   3'- -GCaAGGUGUGCUC-CAGuagCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 104176 0.77 0.546386
Target:  5'- gGcgCCGCGCGcGGGUCGUCGGGCGg- -3'
miRNA:   3'- gCaaGGUGUGC-UCCAGUAGCUCGUgg -5'
23811 5' -52.7 NC_005261.1 + 33482 0.76 0.577031
Target:  5'- cCGggCCcgcuCGCGGGGcCcgCGAGCACCa -3'
miRNA:   3'- -GCaaGGu---GUGCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 125278 0.74 0.659979
Target:  5'- gGggCCGCugGAaGUCAggccgCGGGCGCCg -3'
miRNA:   3'- gCaaGGUGugCUcCAGUa----GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 37526 0.74 0.670333
Target:  5'- uCGgccugCCGCACGAGGUC--CGcGCGCCg -3'
miRNA:   3'- -GCaa---GGUGUGCUCCAGuaGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 31303 0.74 0.711333
Target:  5'- cCGccgCCGCGCGGGGcCcgCGGGCGCg -3'
miRNA:   3'- -GCaa-GGUGUGCUCCaGuaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 41259 0.73 0.731454
Target:  5'- gCGUacUCCAC-CGAGGUC-UCGcucuGCGCCc -3'
miRNA:   3'- -GCA--AGGUGuGCUCCAGuAGCu---CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 84954 0.73 0.731454
Target:  5'- uCGgcggCCGC-CGAGG-CGUCGGGCGCg -3'
miRNA:   3'- -GCaa--GGUGuGCUCCaGUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 99602 0.73 0.741387
Target:  5'- --gUCCAcCGCGAGcGUCGUCcacAGCGCCg -3'
miRNA:   3'- gcaAGGU-GUGCUC-CAGUAGc--UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 85994 0.73 0.760947
Target:  5'- uGcgCCGCcgACGGGG-CGUCGuGCGCCa -3'
miRNA:   3'- gCaaGGUG--UGCUCCaGUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 92431 0.72 0.789379
Target:  5'- cCG-UCCGCGaGAGGUCGaacggGAGCACCa -3'
miRNA:   3'- -GCaAGGUGUgCUCCAGUag---CUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 100403 0.72 0.798576
Target:  5'- cCGUugUCCA-GCGGGGggcgCAUCGAGgCGCCc -3'
miRNA:   3'- -GCA--AGGUgUGCUCCa---GUAGCUC-GUGG- -5'
23811 5' -52.7 NC_005261.1 + 63398 0.72 0.807619
Target:  5'- cCGUggUCgaACAUGAGGUCGUCG-GCGuCCg -3'
miRNA:   3'- -GCA--AGg-UGUGCUCCAGUAGCuCGU-GG- -5'
23811 5' -52.7 NC_005261.1 + 64823 0.71 0.816497
Target:  5'- gCGcgCCGCGCGccGGGUCcgCGcgcugcAGCGCCa -3'
miRNA:   3'- -GCaaGGUGUGC--UCCAGuaGC------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 68640 0.71 0.842062
Target:  5'- ---cCCGCGacCGAGGUCAUCGu-CACCg -3'
miRNA:   3'- gcaaGGUGU--GCUCCAGUAGCucGUGG- -5'
23811 5' -52.7 NC_005261.1 + 110922 0.71 0.842062
Target:  5'- uGUUCCugcCGCGcuGGG-CAcCGAGCGCCg -3'
miRNA:   3'- gCAAGGu--GUGC--UCCaGUaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 35772 0.71 0.8502
Target:  5'- uCGggCCgagACAgGAGGcCcgCGGGCGCCa -3'
miRNA:   3'- -GCaaGG---UGUgCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 72971 0.71 0.8502
Target:  5'- cCGccgCCGCG-GGGGUCcgCGAGCGCg -3'
miRNA:   3'- -GCaa-GGUGUgCUCCAGuaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 85273 0.7 0.858134
Target:  5'- ---aCCACugGGGGUuaggCGUCGGGCucCCg -3'
miRNA:   3'- gcaaGGUGugCUCCA----GUAGCUCGu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.