miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 38722 0.69 0.720734
Target:  5'- ----cGCGCCcccaGCgCCCGCAGAGC-CCg -3'
miRNA:   3'- aaauuUGUGG----CG-GGGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 95000 0.69 0.720734
Target:  5'- ----cGCcCCGCCCUGCGGGGCgggCUa -3'
miRNA:   3'- aaauuUGuGGCGGGGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 103383 0.69 0.727848
Target:  5'- ----cGCGCCGCCgcgCCGCGGccgccugcgccuccAGCUCCg -3'
miRNA:   3'- aaauuUGUGGCGG---GGCGUC--------------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 51320 0.69 0.730884
Target:  5'- ---cGGCGCCGCCgCCGCcuucgucGGGCUCUUc -3'
miRNA:   3'- aaauUUGUGGCGG-GGCGu------CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 130580 0.69 0.730884
Target:  5'- --gAAGCGCCGCCgCGCGGccccGCgCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGgGCGUCu---CGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 40785 0.69 0.730884
Target:  5'- ---cAGC-CCGCCgCGCAG-GCUCCc -3'
miRNA:   3'- aaauUUGuGGCGGgGCGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 82386 0.69 0.730884
Target:  5'- ---cAGCGCCGCccagCCCGCGGGGCcgucgUCCc -3'
miRNA:   3'- aaauUUGUGGCG----GGGCGUCUCG-----AGGa -5'
23812 5' -55.6 NC_005261.1 + 11641 0.69 0.739942
Target:  5'- ---cGGCGCCcccucgaGCCCCGcCGGAGCcCCUg -3'
miRNA:   3'- aaauUUGUGG-------CGGGGC-GUCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 2939 0.69 0.740943
Target:  5'- -----cCACCGCCgCgGCcGGGCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG-GgCGuCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 90063 0.69 0.720734
Target:  5'- ---cAGCGgCGCCCCGCGG-GCgCCg -3'
miRNA:   3'- aaauUUGUgGCGGGGCGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 11214 0.69 0.719714
Target:  5'- -aUAAACGCCGCguggcccCCCGCGGGcgcGCUuCCUc -3'
miRNA:   3'- aaAUUUGUGGCG-------GGGCGUCU---CGA-GGA- -5'
23812 5' -55.6 NC_005261.1 + 84364 0.69 0.700203
Target:  5'- --aAGGCGCCG-CCCGCGG-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCgGGGCGUCuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 84569 0.69 0.700203
Target:  5'- --gGAGCACgGCCCCGUAGAcggCCg -3'
miRNA:   3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5'
23812 5' -55.6 NC_005261.1 + 100060 0.69 0.700203
Target:  5'- ----cGCGCCGCCgCCGCccgGGGGCgcgCCg -3'
miRNA:   3'- aaauuUGUGGCGG-GGCG---UCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 62020 0.69 0.709477
Target:  5'- --aAAGCGCCGUcugccguccuCCCGCGGcucggccGGCUCCa -3'
miRNA:   3'- aaaUUUGUGGCG----------GGGCGUC-------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 125 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5'
23812 5' -55.6 NC_005261.1 + 59538 0.69 0.710504
Target:  5'- -----cCGCCGCCaCCGCGcgcGGGCUUCUa -3'
miRNA:   3'- aaauuuGUGGCGG-GGCGU---CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 124908 0.69 0.710504
Target:  5'- -----cCGCCGCCacgcgggaagCCGCGGAGgCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG----------GGCGUCUC-GAGGa -5'
23812 5' -55.6 NC_005261.1 + 137808 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5'
23812 5' -55.6 NC_005261.1 + 100828 0.69 0.740943
Target:  5'- ----uGCGCCGCCCagGCcgGGAGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGGg-CG--UCUCGAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.