Results 101 - 120 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 55030 | 0.66 | 0.874397 |
Target: 5'- -gUAGcCGCCgGCCCCGCGcAGCUgCg -3' miRNA: 3'- aaAUUuGUGG-CGGGGCGUcUCGAgGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 113579 | 0.66 | 0.874397 |
Target: 5'- --cGGugGCCGCCgCGCuGGGCgaCCUc -3' miRNA: 3'- aaaUUugUGGCGGgGCGuCUCGa-GGA- -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 23198 | 0.66 | 0.874397 |
Target: 5'- ----cGCGCCGCggggCCCGCAGcGGCggCCg -3' miRNA: 3'- aaauuUGUGGCG----GGGCGUC-UCGa-GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 85989 | 0.66 | 0.874397 |
Target: 5'- --cGAGCugCGCCgCCGaCGGGGCgucgugcgCCa -3' miRNA: 3'- aaaUUUGugGCGG-GGC-GUCUCGa-------GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 118320 | 0.66 | 0.879559 |
Target: 5'- ----cGCACCGCgcugcuggccaugaCCUGCGGGcuGCUCCUc -3' miRNA: 3'- aaauuUGUGGCG--------------GGGCGUCU--CGAGGA- -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 48242 | 0.66 | 0.881736 |
Target: 5'- -----cUACCGcCCCCGCAGcGCggggCCa -3' miRNA: 3'- aaauuuGUGGC-GGGGCGUCuCGa---GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 83850 | 0.66 | 0.866827 |
Target: 5'- -----cCGCgGCCCCGCuGGGCUgggCCg -3' miRNA: 3'- aaauuuGUGgCGGGGCGuCUCGA---GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 116509 | 0.66 | 0.863737 |
Target: 5'- --aGAGCGCCGCCgCgGCGGcgcgaggcccgccGCUCCg -3' miRNA: 3'- aaaUUUGUGGCGG-GgCGUCu------------CGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 95206 | 0.66 | 0.888841 |
Target: 5'- ----cGCGCCGCCCgcccgCGCGGugcguGUUCCa -3' miRNA: 3'- aaauuUGUGGCGGG-----GCGUCu----CGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 50101 | 0.66 | 0.851026 |
Target: 5'- ----cACGCUGCCCgcgccgCGCAGGGCcgCCa -3' miRNA: 3'- aaauuUGUGGCGGG------GCGUCUCGa-GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 79158 | 0.66 | 0.851026 |
Target: 5'- --cGAGCACCagcaGCCCCGUGGccAGCgcgCCg -3' miRNA: 3'- aaaUUUGUGG----CGGGGCGUC--UCGa--GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 87672 | 0.66 | 0.851026 |
Target: 5'- ---cAGCACCGCCa-GCGGugagucgcAGCUCCg -3' miRNA: 3'- aaauUUGUGGCGGggCGUC--------UCGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 97911 | 0.66 | 0.851026 |
Target: 5'- -cUGGGCGCCGggcguCCCCGCuGuacuggccgccAGCUCCg -3' miRNA: 3'- aaAUUUGUGGC-----GGGGCGuC-----------UCGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 1282 | 0.66 | 0.851026 |
Target: 5'- ---cGGCGCCcaGgCCgGCGGGGCUCCc -3' miRNA: 3'- aaauUUGUGG--CgGGgCGUCUCGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 134569 | 0.66 | 0.851026 |
Target: 5'- ---cGGCGCCGCggcUgCGCAGGGCgggCCUg -3' miRNA: 3'- aaauUUGUGGCG---GgGCGUCUCGa--GGA- -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 45022 | 0.66 | 0.859035 |
Target: 5'- --gGAACGCgGUCCCGCGcuuccucugcGAGgUCCg -3' miRNA: 3'- aaaUUUGUGgCGGGGCGU----------CUCgAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 46491 | 0.66 | 0.859035 |
Target: 5'- ---cGGCGCC-CUCCGCGGGGCgcagCCc -3' miRNA: 3'- aaauUUGUGGcGGGGCGUCUCGa---GGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 77337 | 0.66 | 0.859035 |
Target: 5'- ---cGGCGCCGCCCCccgccaugagcGCAGuGCaCCa -3' miRNA: 3'- aaauUUGUGGCGGGG-----------CGUCuCGaGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 96039 | 0.66 | 0.859035 |
Target: 5'- ---cAACGCCGCguCCCGCcc-GCUCCa -3' miRNA: 3'- aaauUUGUGGCG--GGGCGucuCGAGGa -5' |
|||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 131108 | 0.66 | 0.859035 |
Target: 5'- ----cGCGCCGCCCaaccccuCAGGGCUCg- -3' miRNA: 3'- aaauuUGUGGCGGGgc-----GUCUCGAGga -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home