miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 50794 0.67 0.824899
Target:  5'- ------gGCCGCCCCGgCGccgccgccaugacGGGCUCCg -3'
miRNA:   3'- aaauuugUGGCGGGGC-GU-------------CUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 50915 0.76 0.348746
Target:  5'- ---cGGCGCCGCCUCGCcgggcgcGGGGCUCCc -3'
miRNA:   3'- aaauUUGUGGCGGGGCG-------UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 51320 0.69 0.730884
Target:  5'- ---cGGCGCCGCCgCCGCcuucgucGGGCUCUUc -3'
miRNA:   3'- aaauUUGUGGCGG-GGCGu------CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 52039 0.71 0.62694
Target:  5'- ---cAACGcCCGCCCCGCccgccGCUCCUa -3'
miRNA:   3'- aaauUUGU-GGCGGGGCGucu--CGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 53705 0.66 0.881736
Target:  5'- --cGGGCGCCGCgCgCCGCGGccAGCUgCg -3'
miRNA:   3'- aaaUUUGUGGCG-G-GGCGUC--UCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 54628 0.71 0.61642
Target:  5'- --cGAGCACCGCCCgCGUgauGAGCgcgCCc -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGu--CUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 55030 0.66 0.874397
Target:  5'- -gUAGcCGCCgGCCCCGCGcAGCUgCg -3'
miRNA:   3'- aaAUUuGUGG-CGGGGCGUcUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 58333 0.83 0.124607
Target:  5'- --cGAGCACCGCCUCGCGGAGCcgcgCCg -3'
miRNA:   3'- aaaUUUGUGGCGGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 58535 0.67 0.825771
Target:  5'- --cGAGC-CCaGCCgCCGCccGGGCUCCUg -3'
miRNA:   3'- aaaUUUGuGG-CGG-GGCGu-CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 58729 0.71 0.62694
Target:  5'- -----cCGCCGCCgCGCAGAGCgcgCUg -3'
miRNA:   3'- aaauuuGUGGCGGgGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 59023 0.67 0.840302
Target:  5'- ---cGGCGCCGCCaggaacgggugccgCCGCGcGAGCUCa- -3'
miRNA:   3'- aaauUUGUGGCGG--------------GGCGU-CUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 59538 0.69 0.710504
Target:  5'- -----cCGCCGCCaCCGCGcgcGGGCUUCUa -3'
miRNA:   3'- aaauuuGUGGCGG-GGCGU---CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 60777 0.69 0.689842
Target:  5'- -aUGGACGCCGCCgCGCGcAGCaCCg -3'
miRNA:   3'- aaAUUUGUGGCGGgGCGUcUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 62020 0.69 0.709477
Target:  5'- --aAAGCGCCGUcugccguccuCCCGCGGcucggccGGCUCCa -3'
miRNA:   3'- aaaUUUGUGGCG----------GGGCGUC-------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 62113 0.7 0.647985
Target:  5'- gUUGGccACGCCGUCCUGCAG-GC-CCUg -3'
miRNA:   3'- aAAUU--UGUGGCGGGGCGUCuCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 65580 0.67 0.798841
Target:  5'- ----cGCACCuGgUCCGC-GAGCUCCUg -3'
miRNA:   3'- aaauuUGUGG-CgGGGCGuCUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 66862 0.67 0.834387
Target:  5'- ----cACGCCGCCaCCG-AGAGC-CCa -3'
miRNA:   3'- aaauuUGUGGCGG-GGCgUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 67772 0.66 0.888841
Target:  5'- --gAGGCGCCGCCCC-CGGccgccccCUCCUc -3'
miRNA:   3'- aaaUUUGUGGCGGGGcGUCuc-----GAGGA- -5'
23812 5' -55.6 NC_005261.1 + 68750 0.68 0.750902
Target:  5'- --gAAGCGcCCGCCggggcgCCGCGGAGCcgCCg -3'
miRNA:   3'- aaaUUUGU-GGCGG------GGCGUCUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 69286 0.67 0.825771
Target:  5'- ----cGCGCCGaCCCCggcGCGGGGCgCCg -3'
miRNA:   3'- aaauuUGUGGC-GGGG---CGUCUCGaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.