miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 70909 0.75 0.40871
Target:  5'- cUUGcGCGCCacGUCCCGCGcGAGCUCCa -3'
miRNA:   3'- aAAUuUGUGG--CGGGGCGU-CUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 71148 0.8 0.204824
Target:  5'- --cAAGCGCCGCCCCgGCAG-GCUCUg -3'
miRNA:   3'- aaaUUUGUGGCGGGG-CGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 72876 0.71 0.61642
Target:  5'- --cGGGCAgguCCGCCCCGCcgccgggguAGAGCUCg- -3'
miRNA:   3'- aaaUUUGU---GGCGGGGCG---------UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 72966 0.71 0.605912
Target:  5'- ----cGCGcCCGCCgCCGCGGGGgUCCg -3'
miRNA:   3'- aaauuUGU-GGCGG-GGCGUCUCgAGGa -5'
23812 5' -55.6 NC_005261.1 + 74462 0.7 0.647985
Target:  5'- --gGGGCGCCGCCCCcgGCGcGGCgugCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGGG--CGUcUCGa--GGA- -5'
23812 5' -55.6 NC_005261.1 + 75306 0.66 0.888141
Target:  5'- ----cGCACCGCgCCaccgucggcggcgCGCGGAGC-CCUg -3'
miRNA:   3'- aaauuUGUGGCG-GG-------------GCGUCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 76618 0.66 0.881736
Target:  5'- -----cCGCCGCCCCGCu--GC-CCa -3'
miRNA:   3'- aaauuuGUGGCGGGGCGucuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 77337 0.66 0.859035
Target:  5'- ---cGGCGCCGCCCCccgccaugagcGCAGuGCaCCa -3'
miRNA:   3'- aaauUUGUGGCGGGG-----------CGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 79158 0.66 0.851026
Target:  5'- --cGAGCACCagcaGCCCCGUGGccAGCgcgCCg -3'
miRNA:   3'- aaaUUUGUGG----CGGGGCGUC--UCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 79230 0.67 0.825771
Target:  5'- --aGAGCGCgGCgCCCGCGGcGC-CCa -3'
miRNA:   3'- aaaUUUGUGgCG-GGGCGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 81454 0.71 0.605912
Target:  5'- --cGGGCGCCGCCagcaGCAGGGC-CCa -3'
miRNA:   3'- aaaUUUGUGGCGGgg--CGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 81477 0.68 0.789534
Target:  5'- ----cACGCCGCCCagaGCAGGGC-Cg- -3'
miRNA:   3'- aaauuUGUGGCGGGg--CGUCUCGaGga -5'
23812 5' -55.6 NC_005261.1 + 82227 0.67 0.807989
Target:  5'- gUUGAGCAgcaCGuCCCCGUAGAcGCUCa- -3'
miRNA:   3'- aAAUUUGUg--GC-GGGGCGUCU-CGAGga -5'
23812 5' -55.6 NC_005261.1 + 82386 0.69 0.730884
Target:  5'- ---cAGCGCCGCccagCCCGCGGGGCcgucgUCCc -3'
miRNA:   3'- aaauUUGUGGCG----GGGCGUCUCG-----AGGa -5'
23812 5' -55.6 NC_005261.1 + 82992 0.66 0.874397
Target:  5'- --gAGGCgGCCGCCUCGCGcaccGAGCcgCCg -3'
miRNA:   3'- aaaUUUG-UGGCGGGGCGU----CUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 83037 0.67 0.842808
Target:  5'- --gGAGgGCCGCUcgCCGCgggagGGGGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGG--GGCG-----UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 83248 0.71 0.583922
Target:  5'- --cGGAC-UCGCCCugguucgcggugaCGCAGAGCUCCUc -3'
miRNA:   3'- aaaUUUGuGGCGGG-------------GCGUCUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 83850 0.66 0.866827
Target:  5'- -----cCGCgGCCCCGCuGGGCUgggCCg -3'
miRNA:   3'- aaauuuGUGgCGGGGCGuCUCGA---GGa -5'
23812 5' -55.6 NC_005261.1 + 84364 0.69 0.700203
Target:  5'- --aAGGCGCCG-CCCGCGG-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCgGGGCGUCuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 84569 0.69 0.700203
Target:  5'- --gGAGCACgGCCCCGUAGAcggCCg -3'
miRNA:   3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.