miRNA display CGI


Results 121 - 134 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 124908 0.69 0.710504
Target:  5'- -----cCGCCGCCacgcgggaagCCGCGGAGgCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG----------GGCGUCUC-GAGGa -5'
23812 5' -55.6 NC_005261.1 + 125300 0.75 0.37414
Target:  5'- --cGGGCGCCGgaCCCGCGGGcGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCg-GGGCGUCU-CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 125534 0.72 0.533352
Target:  5'- ----cGCGCCG-CCCGCAGGGCggcgCCa -3'
miRNA:   3'- aaauuUGUGGCgGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 128794 0.67 0.816969
Target:  5'- -cUGGGCGCCcggGCCCgCgGCGGGGCUCg- -3'
miRNA:   3'- aaAUUUGUGG---CGGG-G-CGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 129287 0.66 0.881736
Target:  5'- ----cGCGCCGCCCCGCcc-GCcCCc -3'
miRNA:   3'- aaauuUGUGGCGGGGCGucuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 130580 0.69 0.730884
Target:  5'- --gAAGCGCCGCCgCGCGGccccGCgCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGgGCGUCu---CGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 131108 0.66 0.859035
Target:  5'- ----cGCGCCGCCCaaccccuCAGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGGgc-----GUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 132311 0.69 0.740943
Target:  5'- cUUAGGCGCCccaucCCCCGCGGGGa-CCUg -3'
miRNA:   3'- aAAUUUGUGGc----GGGGCGUCUCgaGGA- -5'
23812 5' -55.6 NC_005261.1 + 132908 0.67 0.816969
Target:  5'- --cGGGCGgCGCCgaGCGGcGGCUCCUg -3'
miRNA:   3'- aaaUUUGUgGCGGggCGUC-UCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 133353 0.76 0.326125
Target:  5'- ---cGGCGCUGCCgCGCAGGGCUUCg -3'
miRNA:   3'- aaauUUGUGGCGGgGCGUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 134357 0.67 0.834387
Target:  5'- ----cGCGCCGCCgCGCggGGGGCggcgCCg -3'
miRNA:   3'- aaauuUGUGGCGGgGCG--UCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 134569 0.66 0.851026
Target:  5'- ---cGGCGCCGCggcUgCGCAGGGCgggCCUg -3'
miRNA:   3'- aaauUUGUGGCG---GgGCGUCUCGa--GGA- -5'
23812 5' -55.6 NC_005261.1 + 135151 0.73 0.513147
Target:  5'- ---cGACGCCGCCuCCGCccgcucgaucgGGAGCUCgCUg -3'
miRNA:   3'- aaauUUGUGGCGG-GGCG-----------UCUCGAG-GA- -5'
23812 5' -55.6 NC_005261.1 + 137808 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.