miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 97911 0.66 0.851026
Target:  5'- -cUGGGCGCCGggcguCCCCGCuGuacuggccgccAGCUCCg -3'
miRNA:   3'- aaAUUUGUGGC-----GGGGCGuC-----------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 97851 0.67 0.834387
Target:  5'- --cGGGCGCCGCCgCgGCAGcGCggCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GgCGUCuCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 96039 0.66 0.859035
Target:  5'- ---cAACGCCGCguCCCGCcc-GCUCCa -3'
miRNA:   3'- aaauUUGUGGCG--GGGCGucuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 95744 0.68 0.760751
Target:  5'- ---cGGCGCCGCCgCCGCcgccgGGGGCgCCg -3'
miRNA:   3'- aaauUUGUGGCGG-GGCG-----UCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 95206 0.66 0.888841
Target:  5'- ----cGCGCCGCCCgcccgCGCGGugcguGUUCCa -3'
miRNA:   3'- aaauuUGUGGCGGG-----GCGUCu----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 95000 0.69 0.720734
Target:  5'- ----cGCcCCGCCCUGCGGGGCgggCUa -3'
miRNA:   3'- aaauuUGuGGCGGGGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 92750 0.67 0.816969
Target:  5'- --cGAGCGCCGCCCgCGCc--GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGucuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 92161 0.66 0.888841
Target:  5'- --cGAGCGCgCGCUCgGUGGAGCcgCCg -3'
miRNA:   3'- aaaUUUGUG-GCGGGgCGUCUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 90063 0.69 0.720734
Target:  5'- ---cAGCGgCGCCCCGCGG-GCgCCg -3'
miRNA:   3'- aaauUUGUgGCGGGGCGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 87672 0.66 0.851026
Target:  5'- ---cAGCACCGCCa-GCGGugagucgcAGCUCCg -3'
miRNA:   3'- aaauUUGUGGCGGggCGUC--------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 87635 0.71 0.605912
Target:  5'- --cGAACGCCGCCUccaCGguGAGC-CCg -3'
miRNA:   3'- aaaUUUGUGGCGGG---GCguCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 87450 0.66 0.881736
Target:  5'- --gAAGCGCCGCCgCGCcu-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGGgGCGucuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 86366 0.7 0.67943
Target:  5'- --aAGGCGcCCGCgUCGCAGcGCUCCa -3'
miRNA:   3'- aaaUUUGU-GGCGgGGCGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 85989 0.66 0.874397
Target:  5'- --cGAGCugCGCCgCCGaCGGGGCgucgugcgCCa -3'
miRNA:   3'- aaaUUUGugGCGG-GGC-GUCUCGa-------GGa -5'
23812 5' -55.6 NC_005261.1 + 84569 0.69 0.700203
Target:  5'- --gGAGCACgGCCCCGUAGAcggCCg -3'
miRNA:   3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5'
23812 5' -55.6 NC_005261.1 + 84364 0.69 0.700203
Target:  5'- --aAGGCGCCG-CCCGCGG-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCgGGGCGUCuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 83850 0.66 0.866827
Target:  5'- -----cCGCgGCCCCGCuGGGCUgggCCg -3'
miRNA:   3'- aaauuuGUGgCGGGGCGuCUCGA---GGa -5'
23812 5' -55.6 NC_005261.1 + 83248 0.71 0.583922
Target:  5'- --cGGAC-UCGCCCugguucgcggugaCGCAGAGCUCCUc -3'
miRNA:   3'- aaaUUUGuGGCGGG-------------GCGUCUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 83037 0.67 0.842808
Target:  5'- --gGAGgGCCGCUcgCCGCgggagGGGGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGG--GGCG-----UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 82992 0.66 0.874397
Target:  5'- --gAGGCgGCCGCCUCGCGcaccGAGCcgCCg -3'
miRNA:   3'- aaaUUUG-UGGCGGGGCGU----CUCGa-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.