miRNA display CGI


Results 101 - 120 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 42213 0.72 0.533352
Target:  5'- ----cGCGCgggCGCCCCGCcgcGAGCUCCg -3'
miRNA:   3'- aaauuUGUG---GCGGGGCGu--CUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 40868 0.71 0.605912
Target:  5'- --cGAAgGCCGCCCCGaaCAGGGUUCg- -3'
miRNA:   3'- aaaUUUgUGGCGGGGC--GUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 40785 0.69 0.730884
Target:  5'- ---cAGC-CCGCCgCGCAG-GCUCCc -3'
miRNA:   3'- aaauUUGuGGCGGgGCGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 40253 0.66 0.881736
Target:  5'- -gUGAGCGCCauggcggcgGCCgCgGCGGGGCUCa- -3'
miRNA:   3'- aaAUUUGUGG---------CGG-GgCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 38722 0.69 0.720734
Target:  5'- ----cGCGCCcccaGCgCCCGCAGAGC-CCg -3'
miRNA:   3'- aaauuUGUGG----CG-GGGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 36957 0.66 0.874397
Target:  5'- --aAGGC-CCGCCgcgcggCGCAGAGCUCg- -3'
miRNA:   3'- aaaUUUGuGGCGGg-----GCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 35817 0.68 0.789534
Target:  5'- -cUGGACcCCgGCCCCG-AGAGCUCg- -3'
miRNA:   3'- aaAUUUGuGG-CGGGGCgUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 33986 0.75 0.365813
Target:  5'- -----cCGCCGCCCCGgAGcugGGCUCCUg -3'
miRNA:   3'- aaauuuGUGGCGGGGCgUC---UCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 33549 0.66 0.888841
Target:  5'- --gGGGCGCCaGCCCCGCcaa-CUCCg -3'
miRNA:   3'- aaaUUUGUGG-CGGGGCGucucGAGGa -5'
23812 5' -55.6 NC_005261.1 + 32131 0.68 0.780077
Target:  5'- ----cGCGCCGCCaaCCGCugGGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGG--GGCG--UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 32057 0.67 0.834387
Target:  5'- --aGGACAUgGCCgCGCAGAGCg--- -3'
miRNA:   3'- aaaUUUGUGgCGGgGCGUCUCGagga -5'
23812 5' -55.6 NC_005261.1 + 31443 0.68 0.760751
Target:  5'- ---cGGCGCCGCCCgGCGaggacGAGCgCCg -3'
miRNA:   3'- aaauUUGUGGCGGGgCGU-----CUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 31303 0.71 0.61642
Target:  5'- -----cCGCCGCCgCGCGGGGC-CCg -3'
miRNA:   3'- aaauuuGUGGCGGgGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 29827 0.66 0.851026
Target:  5'- ----cGCGCCGCgCUCGCcGAGCUgCg -3'
miRNA:   3'- aaauuUGUGGCG-GGGCGuCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 27461 0.74 0.445205
Target:  5'- ------gGCCGCCCCGCGGGGCgggcaggCCc -3'
miRNA:   3'- aaauuugUGGCGGGGCGUCUCGa------GGa -5'
23812 5' -55.6 NC_005261.1 + 23198 0.66 0.874397
Target:  5'- ----cGCGCCGCggggCCCGCAGcGGCggCCg -3'
miRNA:   3'- aaauuUGUGGCG----GGGCGUC-UCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 21877 0.67 0.816969
Target:  5'- --cGAACG-CGCgCCCGCGGGGCcCCc -3'
miRNA:   3'- aaaUUUGUgGCG-GGGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 21649 0.68 0.789534
Target:  5'- --cGGACGCCGCUgCCGCAccgccgguacGuGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GGCGU----------CuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 20122 0.71 0.605912
Target:  5'- ----cGCGCgGgCCCGCAGcGGCUCCg -3'
miRNA:   3'- aaauuUGUGgCgGGGCGUC-UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 18748 0.75 0.382595
Target:  5'- --aAAACAgCgGCCCCGCAGAGCagggCCa -3'
miRNA:   3'- aaaUUUGU-GgCGGGGCGUCUCGa---GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.