Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 33986 | 0.75 | 0.365813 |
Target: 5'- -----cCGCCGCCCCGgAGcugGGCUCCUg -3' miRNA: 3'- aaauuuGUGGCGGGGCgUC---UCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 50915 | 0.76 | 0.348746 |
Target: 5'- ---cGGCGCCGCCUCGCcgggcgcGGGGCUCCc -3' miRNA: 3'- aaauUUGUGGCGGGGCG-------UCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 133353 | 0.76 | 0.326125 |
Target: 5'- ---cGGCGCUGCCgCGCAGGGCUUCg -3' miRNA: 3'- aaauUUGUGGCGGgGCGUCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 71148 | 0.8 | 0.204824 |
Target: 5'- --cAAGCGCCGCCCCgGCAG-GCUCUg -3' miRNA: 3'- aaaUUUGUGGCGGGG-CGUCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 118590 | 0.81 | 0.166653 |
Target: 5'- ----cGCGCCGCCgCCGCGGAGCUCg- -3' miRNA: 3'- aaauuUGUGGCGG-GGCGUCUCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 15790 | 0.72 | 0.533352 |
Target: 5'- --cGGGCGCCGCCCgCGCGGccAGCgCCg -3' miRNA: 3'- aaaUUUGUGGCGGG-GCGUC--UCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 42213 | 0.72 | 0.533352 |
Target: 5'- ----cGCGCgggCGCCCCGCcgcGAGCUCCg -3' miRNA: 3'- aaauuUGUG---GCGGGGCGu--CUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 116186 | 0.71 | 0.605912 |
Target: 5'- ---cGACGCCGCUgggcgcgucgCCGCAGAagcGCUCCa -3' miRNA: 3'- aaauUUGUGGCGG----------GGCGUCU---CGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 40868 | 0.71 | 0.605912 |
Target: 5'- --cGAAgGCCGCCCCGaaCAGGGUUCg- -3' miRNA: 3'- aaaUUUgUGGCGGGGC--GUCUCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 87635 | 0.71 | 0.605912 |
Target: 5'- --cGAACGCCGCCUccaCGguGAGC-CCg -3' miRNA: 3'- aaaUUUGUGGCGGG---GCguCUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 81454 | 0.71 | 0.605912 |
Target: 5'- --cGGGCGCCGCCagcaGCAGGGC-CCa -3' miRNA: 3'- aaaUUUGUGGCGGgg--CGUCUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 72966 | 0.71 | 0.605912 |
Target: 5'- ----cGCGcCCGCCgCCGCGGGGgUCCg -3' miRNA: 3'- aaauuUGU-GGCGG-GGCGUCUCgAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 20122 | 0.71 | 0.605912 |
Target: 5'- ----cGCGCgGgCCCGCAGcGGCUCCg -3' miRNA: 3'- aaauuUGUGgCgGGGCGUC-UCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 101790 | 0.71 | 0.605912 |
Target: 5'- ------uGCCGCCCgGCGGGGCUgCg -3' miRNA: 3'- aaauuugUGGCGGGgCGUCUCGAgGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 106582 | 0.71 | 0.584966 |
Target: 5'- ---cGGgGCCGCCgCGCGGcGCUCCUc -3' miRNA: 3'- aaauUUgUGGCGGgGCGUCuCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 83248 | 0.71 | 0.583922 |
Target: 5'- --cGGAC-UCGCCCugguucgcggugaCGCAGAGCUCCUc -3' miRNA: 3'- aaaUUUGuGGCGGG-------------GCGUCUCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 120956 | 0.71 | 0.574543 |
Target: 5'- --gAGGCuCgCGCCCCGCGGGGCgcgugCCg -3' miRNA: 3'- aaaUUUGuG-GCGGGGCGUCUCGa----GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 110943 | 0.71 | 0.574543 |
Target: 5'- --cGAGCGCCGCCCgGCggcccacccgggAGAGCUgCa -3' miRNA: 3'- aaaUUUGUGGCGGGgCG------------UCUCGAgGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 4588 | 0.71 | 0.574543 |
Target: 5'- --gGGGCGCC-CCCCGgcgcCAGGGCUCCc -3' miRNA: 3'- aaaUUUGUGGcGGGGC----GUCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 125534 | 0.72 | 0.533352 |
Target: 5'- ----cGCGCCG-CCCGCAGGGCggcgCCa -3' miRNA: 3'- aaauuUGUGGCgGGGCGUCUCGa---GGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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