Results 101 - 120 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 51320 | 0.69 | 0.730884 |
Target: 5'- ---cGGCGCCGCCgCCGCcuucgucGGGCUCUUc -3' miRNA: 3'- aaauUUGUGGCGG-GGCGu------CUCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 130580 | 0.69 | 0.730884 |
Target: 5'- --gAAGCGCCGCCgCGCGGccccGCgCCUg -3' miRNA: 3'- aaaUUUGUGGCGGgGCGUCu---CGaGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 40785 | 0.69 | 0.730884 |
Target: 5'- ---cAGC-CCGCCgCGCAG-GCUCCc -3' miRNA: 3'- aaauUUGuGGCGGgGCGUCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 82386 | 0.69 | 0.730884 |
Target: 5'- ---cAGCGCCGCccagCCCGCGGGGCcgucgUCCc -3' miRNA: 3'- aaauUUGUGGCG----GGGCGUCUCG-----AGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 11641 | 0.69 | 0.739942 |
Target: 5'- ---cGGCGCCcccucgaGCCCCGcCGGAGCcCCUg -3' miRNA: 3'- aaauUUGUGG-------CGGGGC-GUCUCGaGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 125 | 0.69 | 0.710504 |
Target: 5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3' miRNA: 3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 62020 | 0.69 | 0.709477 |
Target: 5'- --aAAGCGCCGUcugccguccuCCCGCGGcucggccGGCUCCa -3' miRNA: 3'- aaaUUUGUGGCG----------GGGCGUC-------UCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 31303 | 0.71 | 0.61642 |
Target: 5'- -----cCGCCGCCgCGCGGGGC-CCg -3' miRNA: 3'- aaauuuGUGGCGGgGCGUCUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 52039 | 0.71 | 0.62694 |
Target: 5'- ---cAACGcCCGCCCCGCccgccGCUCCUa -3' miRNA: 3'- aaauUUGU-GGCGGGGCGucu--CGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 58729 | 0.71 | 0.62694 |
Target: 5'- -----cCGCCGCCgCGCAGAGCgcgCUg -3' miRNA: 3'- aaauuuGUGGCGGgGCGUCUCGa--GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 15641 | 0.7 | 0.637465 |
Target: 5'- gUUGuAGCGCCGCCCgGCcgggagcuGGuGCUCCa -3' miRNA: 3'- aAAU-UUGUGGCGGGgCG--------UCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 62113 | 0.7 | 0.647985 |
Target: 5'- gUUGGccACGCCGUCCUGCAG-GC-CCUg -3' miRNA: 3'- aAAUU--UGUGGCGGGGCGUCuCGaGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 74462 | 0.7 | 0.647985 |
Target: 5'- --gGGGCGCCGCCCCcgGCGcGGCgugCCUg -3' miRNA: 3'- aaaUUUGUGGCGGGG--CGUcUCGa--GGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 14775 | 0.7 | 0.658492 |
Target: 5'- --gGGGgGCCGCCCCGCgcAGGugccGCUCCc -3' miRNA: 3'- aaaUUUgUGGCGGGGCG--UCU----CGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 104691 | 0.7 | 0.67943 |
Target: 5'- -cUGGGcCACCGCCCCGaAGAGCggCUg -3' miRNA: 3'- aaAUUU-GUGGCGGGGCgUCUCGagGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 86366 | 0.7 | 0.67943 |
Target: 5'- --aAGGCGcCCGCgUCGCAGcGCUCCa -3' miRNA: 3'- aaaUUUGU-GGCGgGGCGUCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 60777 | 0.69 | 0.689842 |
Target: 5'- -aUGGACGCCGCCgCGCGcAGCaCCg -3' miRNA: 3'- aaAUUUGUGGCGGgGCGUcUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 84364 | 0.69 | 0.700203 |
Target: 5'- --aAGGCGCCG-CCCGCGG-GCUCg- -3' miRNA: 3'- aaaUUUGUGGCgGGGCGUCuCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 84569 | 0.69 | 0.700203 |
Target: 5'- --gGAGCACgGCCCCGUAGAcggCCg -3' miRNA: 3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 100060 | 0.69 | 0.700203 |
Target: 5'- ----cGCGCCGCCgCCGCccgGGGGCgcgCCg -3' miRNA: 3'- aaauuUGUGGCGG-GGCG---UCUCGa--GGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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