Results 81 - 100 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 84569 | 0.69 | 0.700203 |
Target: 5'- --gGAGCACgGCCCCGUAGAcggCCg -3' miRNA: 3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 100060 | 0.69 | 0.700203 |
Target: 5'- ----cGCGCCGCCgCCGCccgGGGGCgcgCCg -3' miRNA: 3'- aaauuUGUGGCGG-GGCG---UCUCGa--GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 62020 | 0.69 | 0.709477 |
Target: 5'- --aAAGCGCCGUcugccguccuCCCGCGGcucggccGGCUCCa -3' miRNA: 3'- aaaUUUGUGGCG----------GGGCGUC-------UCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 125 | 0.69 | 0.710504 |
Target: 5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3' miRNA: 3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 59538 | 0.69 | 0.710504 |
Target: 5'- -----cCGCCGCCaCCGCGcgcGGGCUUCUa -3' miRNA: 3'- aaauuuGUGGCGG-GGCGU---CUCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 124908 | 0.69 | 0.710504 |
Target: 5'- -----cCGCCGCCacgcgggaagCCGCGGAGgCUCCg -3' miRNA: 3'- aaauuuGUGGCGG----------GGCGUCUC-GAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 137808 | 0.69 | 0.710504 |
Target: 5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3' miRNA: 3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 104691 | 0.7 | 0.67943 |
Target: 5'- -cUGGGcCACCGCCCCGaAGAGCggCUg -3' miRNA: 3'- aaAUUU-GUGGCGGGGCgUCUCGagGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 14775 | 0.7 | 0.658492 |
Target: 5'- --gGGGgGCCGCCCCGCgcAGGugccGCUCCc -3' miRNA: 3'- aaaUUUgUGGCGGGGCG--UCU----CGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 74462 | 0.7 | 0.647985 |
Target: 5'- --gGGGCGCCGCCCCcgGCGcGGCgugCCUg -3' miRNA: 3'- aaaUUUGUGGCGGGG--CGUcUCGa--GGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 87635 | 0.71 | 0.605912 |
Target: 5'- --cGAACGCCGCCUccaCGguGAGC-CCg -3' miRNA: 3'- aaaUUUGUGGCGGG---GCguCUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 40868 | 0.71 | 0.605912 |
Target: 5'- --cGAAgGCCGCCCCGaaCAGGGUUCg- -3' miRNA: 3'- aaaUUUgUGGCGGGGC--GUCUCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 116186 | 0.71 | 0.605912 |
Target: 5'- ---cGACGCCGCUgggcgcgucgCCGCAGAagcGCUCCa -3' miRNA: 3'- aaauUUGUGGCGG----------GGCGUCU---CGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 54628 | 0.71 | 0.61642 |
Target: 5'- --cGAGCACCGCCCgCGUgauGAGCgcgCCc -3' miRNA: 3'- aaaUUUGUGGCGGG-GCGu--CUCGa--GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 72876 | 0.71 | 0.61642 |
Target: 5'- --cGGGCAgguCCGCCCCGCcgccgggguAGAGCUCg- -3' miRNA: 3'- aaaUUUGU---GGCGGGGCG---------UCUCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 31303 | 0.71 | 0.61642 |
Target: 5'- -----cCGCCGCCgCGCGGGGC-CCg -3' miRNA: 3'- aaauuuGUGGCGGgGCGUCUCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 52039 | 0.71 | 0.62694 |
Target: 5'- ---cAACGcCCGCCCCGCccgccGCUCCUa -3' miRNA: 3'- aaauUUGU-GGCGGGGCGucu--CGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 58729 | 0.71 | 0.62694 |
Target: 5'- -----cCGCCGCCgCGCAGAGCgcgCUg -3' miRNA: 3'- aaauuuGUGGCGGgGCGUCUCGa--GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 15641 | 0.7 | 0.637465 |
Target: 5'- gUUGuAGCGCCGCCCgGCcgggagcuGGuGCUCCa -3' miRNA: 3'- aAAU-UUGUGGCGGGgCG--------UCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 62113 | 0.7 | 0.647985 |
Target: 5'- gUUGGccACGCCGUCCUGCAG-GC-CCUg -3' miRNA: 3'- aAAUU--UGUGGCGGGGCGUCuCGaGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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