miRNA display CGI


Results 121 - 134 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 74462 0.7 0.647985
Target:  5'- --gGGGCGCCGCCCCcgGCGcGGCgugCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGGG--CGUcUCGa--GGA- -5'
23812 5' -55.6 NC_005261.1 + 14775 0.7 0.658492
Target:  5'- --gGGGgGCCGCCCCGCgcAGGugccGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGGGGCG--UCU----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 104691 0.7 0.67943
Target:  5'- -cUGGGcCACCGCCCCGaAGAGCggCUg -3'
miRNA:   3'- aaAUUU-GUGGCGGGGCgUCUCGagGA- -5'
23812 5' -55.6 NC_005261.1 + 86366 0.7 0.67943
Target:  5'- --aAGGCGcCCGCgUCGCAGcGCUCCa -3'
miRNA:   3'- aaaUUUGU-GGCGgGGCGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 60777 0.69 0.689842
Target:  5'- -aUGGACGCCGCCgCGCGcAGCaCCg -3'
miRNA:   3'- aaAUUUGUGGCGGgGCGUcUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 84364 0.69 0.700203
Target:  5'- --aAGGCGCCG-CCCGCGG-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCgGGGCGUCuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 84569 0.69 0.700203
Target:  5'- --gGAGCACgGCCCCGUAGAcggCCg -3'
miRNA:   3'- aaaUUUGUGgCGGGGCGUCUcgaGGa -5'
23812 5' -55.6 NC_005261.1 + 100060 0.69 0.700203
Target:  5'- ----cGCGCCGCCgCCGCccgGGGGCgcgCCg -3'
miRNA:   3'- aaauuUGUGGCGG-GGCG---UCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 62020 0.69 0.709477
Target:  5'- --aAAGCGCCGUcugccguccuCCCGCGGcucggccGGCUCCa -3'
miRNA:   3'- aaaUUUGUGGCG----------GGGCGUC-------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 125 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5'
23812 5' -55.6 NC_005261.1 + 59538 0.69 0.710504
Target:  5'- -----cCGCCGCCaCCGCGcgcGGGCUUCUa -3'
miRNA:   3'- aaauuuGUGGCGG-GGCGU---CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 124908 0.69 0.710504
Target:  5'- -----cCGCCGCCacgcgggaagCCGCGGAGgCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG----------GGCGUCUC-GAGGa -5'
23812 5' -55.6 NC_005261.1 + 137808 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5'
23812 5' -55.6 NC_005261.1 + 44870 0.68 0.769512
Target:  5'- --aGAGCGCCGCCgcgagcgCCGCGGGGauggCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-------GGCGUCUCga--GGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.