miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 83037 0.67 0.842808
Target:  5'- --gGAGgGCCGCUcgCCGCgggagGGGGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGG--GGCG-----UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 101256 0.67 0.841974
Target:  5'- ---cAGCGCgucgaugCGCUCCGCaaAGGGCUCCa -3'
miRNA:   3'- aaauUUGUG-------GCGGGGCG--UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 59023 0.67 0.840302
Target:  5'- ---cGGCGCCGCCaggaacgggugccgCCGCGcGAGCUCa- -3'
miRNA:   3'- aaauUUGUGGCGG--------------GGCGU-CUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 9353 0.67 0.837779
Target:  5'- --gGAGCACCGCCgacgauccccgggagCCGCAuugcgagguGAGCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGG---------------GGCGU---------CUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 97851 0.67 0.834387
Target:  5'- --cGGGCGCCGCCgCgGCAGcGCggCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GgCGUCuCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 32057 0.67 0.834387
Target:  5'- --aGGACAUgGCCgCGCAGAGCg--- -3'
miRNA:   3'- aaaUUUGUGgCGGgGCGUCUCGagga -5'
23812 5' -55.6 NC_005261.1 + 66862 0.67 0.834387
Target:  5'- ----cACGCCGCCaCCG-AGAGC-CCa -3'
miRNA:   3'- aaauuUGUGGCGG-GGCgUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 134357 0.67 0.834387
Target:  5'- ----cGCGCCGCCgCGCggGGGGCggcgCCg -3'
miRNA:   3'- aaauuUGUGGCGGgGCG--UCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 79230 0.67 0.825771
Target:  5'- --aGAGCGCgGCgCCCGCGGcGC-CCa -3'
miRNA:   3'- aaaUUUGUGgCG-GGGCGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 101194 0.67 0.825771
Target:  5'- ----cACGCCGCCgCCGCcGA-CUCCa -3'
miRNA:   3'- aaauuUGUGGCGG-GGCGuCUcGAGGa -5'
23812 5' -55.6 NC_005261.1 + 58535 0.67 0.825771
Target:  5'- --cGAGC-CCaGCCgCCGCccGGGCUCCUg -3'
miRNA:   3'- aaaUUUGuGG-CGG-GGCGu-CUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 121982 0.67 0.825771
Target:  5'- ---cAGCGCCGCCCagcugGCGGAGgUCa- -3'
miRNA:   3'- aaauUUGUGGCGGGg----CGUCUCgAGga -5'
23812 5' -55.6 NC_005261.1 + 69286 0.67 0.825771
Target:  5'- ----cGCGCCGaCCCCggcGCGGGGCgCCg -3'
miRNA:   3'- aaauuUGUGGC-GGGG---CGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 50794 0.67 0.824899
Target:  5'- ------gGCCGCCCCGgCGccgccgccaugacGGGCUCCg -3'
miRNA:   3'- aaauuugUGGCGGGGC-GU-------------CUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 128794 0.67 0.816969
Target:  5'- -cUGGGCGCCcggGCCCgCgGCGGGGCUCg- -3'
miRNA:   3'- aaAUUUGUGG---CGGG-G-CGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 21877 0.67 0.816969
Target:  5'- --cGAACG-CGCgCCCGCGGGGCcCCc -3'
miRNA:   3'- aaaUUUGUgGCG-GGGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 132908 0.67 0.816969
Target:  5'- --cGGGCGgCGCCgaGCGGcGGCUCCUg -3'
miRNA:   3'- aaaUUUGUgGCGGggCGUC-UCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 92750 0.67 0.816969
Target:  5'- --cGAGCGCCGCCCgCGCc--GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGucuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 82227 0.67 0.807989
Target:  5'- gUUGAGCAgcaCGuCCCCGUAGAcGCUCa- -3'
miRNA:   3'- aAAUUUGUg--GC-GGGGCGUCU-CGAGga -5'
23812 5' -55.6 NC_005261.1 + 107013 0.67 0.807989
Target:  5'- --cGAGCGCCacguGCCCaaggaGCAGGGCgcgCCa -3'
miRNA:   3'- aaaUUUGUGG----CGGGg----CGUCUCGa--GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.