miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 105095 0.66 0.690628
Target:  5'- gCCC-CGGaccuuCCGCGGGGGCuUGC-CCGCGc -3'
miRNA:   3'- -GGGuGUC-----GGCGCUCUCG-GCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 81474 0.66 0.661174
Target:  5'- gCCCAC-GCCGCccagagcAGGGCCGCggcuagCGCGg -3'
miRNA:   3'- -GGGUGuCGGCGc------UCUCGGCGag----GUGC- -5'
23813 3' -60.9 NC_005261.1 + 57382 0.66 0.700365
Target:  5'- gCCCgccaGCAGCuCG-GGGAGCgCGCccgugaUCCGCGg -3'
miRNA:   3'- -GGG----UGUCG-GCgCUCUCG-GCG------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107852 0.66 0.700365
Target:  5'- gCCGCcGCCGCccucgccGGCCGC-CCGCGc -3'
miRNA:   3'- gGGUGuCGGCGcuc----UCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 63454 0.66 0.690628
Target:  5'- gCCCGCcgagcGcCCGCGAGGGuuGCaCgGCGa -3'
miRNA:   3'- -GGGUGu----C-GGCGCUCUCggCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 116771 0.66 0.684763
Target:  5'- gCCUuucugguauuCAGCCGCGAGGGCaUGCuggugcacaguggccUCUACGa -3'
miRNA:   3'- -GGGu---------GUCGGCGCUCUCG-GCG---------------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 96450 0.66 0.680845
Target:  5'- -aUugAGCgGCGGGguacagaaGGCCGCgcUCCGCGg -3'
miRNA:   3'- ggGugUCGgCGCUC--------UCGGCG--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 54362 0.66 0.690628
Target:  5'- uCCCAgGuCCGCGGGcAGCgGCUcggggcgcCCGCGa -3'
miRNA:   3'- -GGGUgUcGGCGCUC-UCGgCGA--------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121861 0.66 0.700365
Target:  5'- gCCCGCGGCuccCGCc-GAGCCGCaUCgACu -3'
miRNA:   3'- -GGGUGUCG---GCGcuCUCGGCG-AGgUGc -5'
23813 3' -60.9 NC_005261.1 + 60262 0.66 0.671024
Target:  5'- gCgGCGGCCGUGaAGAGgCGC-CCGgGg -3'
miRNA:   3'- gGgUGUCGGCGC-UCUCgGCGaGGUgC- -5'
23813 3' -60.9 NC_005261.1 + 94256 0.66 0.661174
Target:  5'- gCCACGG-CGC-AGGGCgGCgCCGCGa -3'
miRNA:   3'- gGGUGUCgGCGcUCUCGgCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121386 0.66 0.704246
Target:  5'- cCCCGCGGCgGCGGcgccugcccgagugcGAcggcuGCCGCcgCCGCu -3'
miRNA:   3'- -GGGUGUCGgCGCU---------------CU-----CGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 70352 0.66 0.680845
Target:  5'- gCCGgGGaCCGgGAGgcGGCgCGCcUCCACGg -3'
miRNA:   3'- gGGUgUC-GGCgCUC--UCG-GCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121642 0.66 0.719672
Target:  5'- gCCGCcGCCgGCGAGcgcgGGCUG-UCCGCGu -3'
miRNA:   3'- gGGUGuCGG-CGCUC----UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 34336 0.66 0.671024
Target:  5'- cCCCaaggggccgggGCGGCCGaCGGGGccgggcGCCGCgcggcgCCGCGc -3'
miRNA:   3'- -GGG-----------UGUCGGC-GCUCU------CGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 93663 0.66 0.690628
Target:  5'- gCCCAcCGGuCCGCGGGcGGCgGCgCCGgCGg -3'
miRNA:   3'- -GGGU-GUC-GGCGCUC-UCGgCGaGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 19037 0.66 0.71005
Target:  5'- --gGCAGCCG-GAGAGCCGC-CagGCa -3'
miRNA:   3'- gggUGUCGGCgCUCUCGGCGaGg-UGc -5'
23813 3' -60.9 NC_005261.1 + 50342 0.66 0.690628
Target:  5'- aCCAgCAGCCGCcGGuaGGCCGCgCC-CGu -3'
miRNA:   3'- gGGU-GUCGGCGcUC--UCGGCGaGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 90730 0.66 0.690628
Target:  5'- aCCgCugGGCCGCGccuGAGgCGCUggCGCGg -3'
miRNA:   3'- -GG-GugUCGGCGCu--CUCgGCGAg-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 29662 0.66 0.680845
Target:  5'- gCCAUGGCCGCGcAGAacgcgcugugGgCGCUgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGC-UCU----------CgGCGA-GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.