miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 16257 0.66 0.690628
Target:  5'- gCCGgGGCCGCcGGGGCCGggCUuCGg -3'
miRNA:   3'- gGGUgUCGGCGcUCUCGGCgaGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 81474 0.66 0.661174
Target:  5'- gCCCAC-GCCGCccagagcAGGGCCGCggcuagCGCGg -3'
miRNA:   3'- -GGGUGuCGGCGc------UCUCGGCGag----GUGC- -5'
23813 3' -60.9 NC_005261.1 + 109040 0.66 0.719672
Target:  5'- gCgCGCAGCCGCGc-GGCCGCcagguagCCcaGCGg -3'
miRNA:   3'- -GgGUGUCGGCGCucUCGGCGa------GG--UGC- -5'
23813 3' -60.9 NC_005261.1 + 107416 0.66 0.719672
Target:  5'- gCCAgGGCCGaGAGcuucguccgguAGCCG-UCCACGu -3'
miRNA:   3'- gGGUgUCGGCgCUC-----------UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 131065 0.66 0.719672
Target:  5'- aCCUGCAGgCCGUGcGGGaCUGCcuggCCACGu -3'
miRNA:   3'- -GGGUGUC-GGCGCuCUC-GGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2418 0.66 0.690628
Target:  5'- cCCCGC-GCgGCGGcGGGCCGCgaucucggCCAgCGc -3'
miRNA:   3'- -GGGUGuCGgCGCU-CUCGGCGa-------GGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 63454 0.66 0.690628
Target:  5'- gCCCGCcgagcGcCCGCGAGGGuuGCaCgGCGa -3'
miRNA:   3'- -GGGUGu----C-GGCGCUCUCggCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 106135 0.66 0.658214
Target:  5'- gCCgGCAacgccggacaugguGCCGCcuc-GCCGCUCCGCGc -3'
miRNA:   3'- -GGgUGU--------------CGGCGcucuCGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 124092 0.66 0.700365
Target:  5'- gCCCGCguAGCgCGCGcacAGGGCCgGCaCCGCa -3'
miRNA:   3'- -GGGUG--UCG-GCGC---UCUCGG-CGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 34336 0.66 0.671024
Target:  5'- cCCCaaggggccgggGCGGCCGaCGGGGccgggcGCCGCgcggcgCCGCGc -3'
miRNA:   3'- -GGG-----------UGUCGGC-GCUCU------CGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 67534 0.66 0.671024
Target:  5'- gCCCGCGGCgGCGAacGUCGCgUCGCc -3'
miRNA:   3'- -GGGUGUCGgCGCUcuCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 2799 0.66 0.680845
Target:  5'- gCCgGCGGCCGgGAgGGGCCGggCgGCc -3'
miRNA:   3'- -GGgUGUCGGCgCU-CUCGGCgaGgUGc -5'
23813 3' -60.9 NC_005261.1 + 61254 0.66 0.71005
Target:  5'- aCUCGCuGGCCGCcuccGGGGCCGUgcCCAUGc -3'
miRNA:   3'- -GGGUG-UCGGCGc---UCUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 61213 0.66 0.680845
Target:  5'- cUCCGCGGuuGCGAucG-CGCUCgGCGu -3'
miRNA:   3'- -GGGUGUCggCGCUcuCgGCGAGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 110 0.66 0.671024
Target:  5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3'
miRNA:   3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 71439 0.66 0.661174
Target:  5'- gCCCGCGGCgCGC-AGccGCCGcCUCC-CGg -3'
miRNA:   3'- -GGGUGUCG-GCGcUCu-CGGC-GAGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 68981 0.67 0.62163
Target:  5'- aCCGCGGCCcuuuucGGGCCGCgcgggcgCCGCGg -3'
miRNA:   3'- gGGUGUCGGcgcu--CUCGGCGa------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 99113 0.67 0.62163
Target:  5'- gCUCGCgaucAGCgC-CGAGAGCUGCUCCAg- -3'
miRNA:   3'- -GGGUG----UCG-GcGCUCUCGGCGAGGUgc -5'
23813 3' -60.9 NC_005261.1 + 28198 0.67 0.62163
Target:  5'- gCCgGCGGCCuCGcc-GCCGCUgCCGCGg -3'
miRNA:   3'- -GGgUGUCGGcGCucuCGGCGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 75823 0.67 0.62163
Target:  5'- gCCCggcGCGGCCGCGcccggggaGGGGCgCGCggcgCCgACGg -3'
miRNA:   3'- -GGG---UGUCGGCGC--------UCUCG-GCGa---GG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.