miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 5436 0.67 0.641415
Target:  5'- aCCGCGGCCGCGGcGGCgGCaacaGCGc -3'
miRNA:   3'- gGGUGUCGGCGCUcUCGgCGagg-UGC- -5'
23813 3' -60.9 NC_005261.1 + 75823 0.67 0.62163
Target:  5'- gCCCggcGCGGCCGCGcccggggaGGGGCgCGCggcgCCgACGg -3'
miRNA:   3'- -GGG---UGUCGGCGC--------UCUCG-GCGa---GG-UGC- -5'
23813 3' -60.9 NC_005261.1 + 46986 0.67 0.631522
Target:  5'- gCCCGcCGGCaGCGcGcGCCGCgccgCCGCGa -3'
miRNA:   3'- -GGGU-GUCGgCGCuCuCGGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 88157 0.67 0.631522
Target:  5'- gCCC-CGGCCGCGc-AGCCGggCCGgGg -3'
miRNA:   3'- -GGGuGUCGGCGCucUCGGCgaGGUgC- -5'
23813 3' -60.9 NC_005261.1 + 131193 0.67 0.641415
Target:  5'- gCCCGCGG-CGCGGucGCCGC-CgGCGc -3'
miRNA:   3'- -GGGUGUCgGCGCUcuCGGCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 106915 0.67 0.641415
Target:  5'- gCCGCGGCgCGCuGcAGGGCCGCcagcgaCACGc -3'
miRNA:   3'- gGGUGUCG-GCG-C-UCUCGGCGag----GUGC- -5'
23813 3' -60.9 NC_005261.1 + 18595 0.67 0.598916
Target:  5'- -gCGCAGCCguGCGAGGuguccgucgcgcgcGCCGaaaUCCGCGa -3'
miRNA:   3'- ggGUGUCGG--CGCUCU--------------CGGCg--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21636 0.67 0.641415
Target:  5'- cCCCGCcccGgCGCG-GAcGCCGCUgCCGCa -3'
miRNA:   3'- -GGGUGu--CgGCGCuCU-CGGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 32541 0.67 0.601874
Target:  5'- gCCC-CGGCCGCGGcgcGGGCCgGCg-CGCGu -3'
miRNA:   3'- -GGGuGUCGGCGCU---CUCGG-CGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29856 0.67 0.650314
Target:  5'- gCUCGcCGGCCGCGcggcgccGGcGCCGCUgCCGCc -3'
miRNA:   3'- -GGGU-GUCGGCGC-------UCuCGGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 116065 0.67 0.641415
Target:  5'- cCCCGCGuGgCGCGccgguccccguGGAuGCCGCggUCCGCGa -3'
miRNA:   3'- -GGGUGU-CgGCGC-----------UCU-CGGCG--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 104915 0.67 0.641415
Target:  5'- cUCCAgGGCCGCGGuGAuguuuGCCGCg-CGCGc -3'
miRNA:   3'- -GGGUgUCGGCGCU-CU-----CGGCGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 43425 0.67 0.641415
Target:  5'- cUCCGCcGCCgGCgGGGAGCUgGCUCgGCGc -3'
miRNA:   3'- -GGGUGuCGG-CG-CUCUCGG-CGAGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 640 0.67 0.601874
Target:  5'- gCgGCGGCCGCcAGcGCCGCgUCCcCGg -3'
miRNA:   3'- gGgUGUCGGCGcUCuCGGCG-AGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 8800 0.67 0.601874
Target:  5'- gCUGCAGCCGcCGAGGGCuugaaggggCGC-CCGCc -3'
miRNA:   3'- gGGUGUCGGC-GCUCUCG---------GCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 73209 0.67 0.641415
Target:  5'- cCCCGgGcGCCuCGAGGGgCGCgguggCCGCGa -3'
miRNA:   3'- -GGGUgU-CGGcGCUCUCgGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 88453 0.67 0.627565
Target:  5'- gCCGC-GCCGCGugagcgugugggcGGGCCGUgCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGCu------------CUCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 104161 0.67 0.62163
Target:  5'- aCCGCGccGuCCGCGGGcGCCGCg-CGCGg -3'
miRNA:   3'- gGGUGU--C-GGCGCUCuCGGCGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 68981 0.67 0.62163
Target:  5'- aCCGCGGCCcuuuucGGGCCGCgcgggcgCCGCGg -3'
miRNA:   3'- gGGUGUCGGcgcu--CUCGGCGa------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 108315 0.67 0.631522
Target:  5'- uCCCagACGGCCGCc---GCgUGCUCCGCGa -3'
miRNA:   3'- -GGG--UGUCGGCGcucuCG-GCGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.