miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 123939 0.72 0.374308
Target:  5'- gCCCgcuagauACAGCCaGCGcAGcGcCCGCUCCGCGa -3'
miRNA:   3'- -GGG-------UGUCGG-CGC-UCuC-GGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 119128 0.72 0.374308
Target:  5'- gCCGCGGCCGCGgcgcggccaucucGGAuCCGC-CCGCGc -3'
miRNA:   3'- gGGUGUCGGCGC-------------UCUcGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 12136 0.72 0.378267
Target:  5'- gCCCGCcGCCGCGGcGGCCGCgcaggccccaagccCCGCa -3'
miRNA:   3'- -GGGUGuCGGCGCUcUCGGCGa-------------GGUGc -5'
23813 3' -60.9 NC_005261.1 + 44449 0.72 0.35952
Target:  5'- uCUCGCGGCUGUGGGAGCaggaGCUgCUGCGc -3'
miRNA:   3'- -GGGUGUCGGCGCUCUCGg---CGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 42689 0.72 0.35952
Target:  5'- gCCgGCAGCCGCGc-GGCCGCcagcugccggaUCCGCu -3'
miRNA:   3'- -GGgUGUCGGCGCucUCGGCG-----------AGGUGc -5'
23813 3' -60.9 NC_005261.1 + 38937 0.72 0.35952
Target:  5'- gCCgGCGGCCGgGcGGGCCGCggCGCGc -3'
miRNA:   3'- -GGgUGUCGGCgCuCUCGGCGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 99039 0.72 0.337014
Target:  5'- gCCCACAGCaccCGCGcGAGCUGCagCUGCGu -3'
miRNA:   3'- -GGGUGUCG---GCGCuCUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 49298 0.72 0.337014
Target:  5'- gCCCGCGGCgGUGAGcGCCGCgcagCCcuCGa -3'
miRNA:   3'- -GGGUGUCGgCGCUCuCGGCGa---GGu-GC- -5'
23813 3' -60.9 NC_005261.1 + 67430 0.72 0.343657
Target:  5'- gCCCGCGGCCaGCGcccaaagGGcAGCCGgUCCGCc -3'
miRNA:   3'- -GGGUGUCGG-CGC-------UC-UCGGCgAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 11925 0.72 0.3444
Target:  5'- gCCgGCGGCUGCGGcGGcCCGCgCCGCGg -3'
miRNA:   3'- -GGgUGUCGGCGCUcUC-GGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 58728 0.72 0.3444
Target:  5'- aCCGCcGCCGCGcAGAGCgCGCUguuaagaaacucCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGC-UCUCG-GCGA------------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21798 0.72 0.351903
Target:  5'- gCCGCAGCCGcCGGccGGGCCGggcCCGCGg -3'
miRNA:   3'- gGGUGUCGGC-GCU--CUCGGCga-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 90767 0.72 0.351903
Target:  5'- cCCCGaGGCCGcCGAG-GCCGCUgCgGCGg -3'
miRNA:   3'- -GGGUgUCGGC-GCUCuCGGCGA-GgUGC- -5'
23813 3' -60.9 NC_005261.1 + 67294 0.71 0.391124
Target:  5'- cCCCGCcGCCGCGcGcgcgccgccgucGGCCGCcgCCGCGc -3'
miRNA:   3'- -GGGUGuCGGCGCuC------------UCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 123005 0.71 0.391124
Target:  5'- aCUACGGCCGCGGccGUgGCgUCCGCGa -3'
miRNA:   3'- gGGUGUCGGCGCUcuCGgCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 114495 0.71 0.391124
Target:  5'- cCUCAuCAGCCGCGAuGAgGCCGUgcaCACGa -3'
miRNA:   3'- -GGGU-GUCGGCGCU-CU-CGGCGag-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 47615 0.71 0.390313
Target:  5'- cCCCugcggggGCGGCCGCGGccGCCGCgcgcaCCGCGu -3'
miRNA:   3'- -GGG-------UGUCGGCGCUcuCGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 93923 0.71 0.383055
Target:  5'- gCCCGCGGgcuugcgccguCCGCGGGcGCCGcCUCCggGCGg -3'
miRNA:   3'- -GGGUGUC-----------GGCGCUCuCGGC-GAGG--UGC- -5'
23813 3' -60.9 NC_005261.1 + 32738 0.71 0.383055
Target:  5'- gUCCGCucuGCgCGCGGcccGCCGCUCUACGg -3'
miRNA:   3'- -GGGUGu--CG-GCGCUcu-CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 87932 0.71 0.391124
Target:  5'- aCCCGgGGCC-UG-GAGCCGCgcgccgCCACGg -3'
miRNA:   3'- -GGGUgUCGGcGCuCUCGGCGa-----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.