miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 28760 0.73 0.308631
Target:  5'- gCCGCGGCCGgGGGcgccugGGCCGCggCGCGg -3'
miRNA:   3'- gGGUGUCGGCgCUC------UCGGCGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 105348 0.73 0.315552
Target:  5'- gCCACGGCCGUGAGgcaGGCCGUgacaggCgGCGc -3'
miRNA:   3'- gGGUGUCGGCGCUC---UCGGCGa-----GgUGC- -5'
23813 3' -60.9 NC_005261.1 + 108187 0.73 0.315552
Target:  5'- gCCGCGGCuccgggCGCGAGAGCUGCgccagCACGg -3'
miRNA:   3'- gGGUGUCG------GCGCUCUCGGCGag---GUGC- -5'
23813 3' -60.9 NC_005261.1 + 103369 0.73 0.315552
Target:  5'- cCCCAgcuCGGCCGCGcgccGCCGCgCCGCGg -3'
miRNA:   3'- -GGGU---GUCGGCGCucu-CGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 50053 0.73 0.322589
Target:  5'- -gCGCcGCCGCGAGaAGcCCGCUgCCGCGu -3'
miRNA:   3'- ggGUGuCGGCGCUC-UC-GGCGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 132074 0.73 0.322589
Target:  5'- gUCGCGGCCGCcGucGCCGCUgCCGCGg -3'
miRNA:   3'- gGGUGUCGGCGcUcuCGGCGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107903 0.73 0.322589
Target:  5'- gUCCGCGGCCGCggccucggccacGAGuGCCGCgcggaucgccgCCACGu -3'
miRNA:   3'- -GGGUGUCGGCG------------CUCuCGGCGa----------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 102791 0.73 0.322589
Target:  5'- gCCC-CGGCCGCGAGcgcggcgcccAGCCGC-CgCGCGc -3'
miRNA:   3'- -GGGuGUCGGCGCUC----------UCGGCGaG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 33427 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 33391 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 118058 0.73 0.322589
Target:  5'- gCUgGCGGCCGCGGcagcGGCCGCagCCGCGc -3'
miRNA:   3'- -GGgUGUCGGCGCUc---UCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 49517 0.73 0.322589
Target:  5'- cUCCGaaaaGGUCGCGGGccAGCCGCcgUCCGCGg -3'
miRNA:   3'- -GGGUg---UCGGCGCUC--UCGGCG--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 127830 0.73 0.329023
Target:  5'- gCUCGCGGCCGCGAGcagcggacggggcGGUCGCggcgCCAgGg -3'
miRNA:   3'- -GGGUGUCGGCGCUC-------------UCGGCGa---GGUgC- -5'
23813 3' -60.9 NC_005261.1 + 125281 0.73 0.329743
Target:  5'- gCCGCuggaagucaGGCCGCGGGcGCCggacccgcgggcGCUCCGCGg -3'
miRNA:   3'- gGGUG---------UCGGCGCUCuCGG------------CGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 72774 0.73 0.329743
Target:  5'- aCgGCGGCCGCGcacgcguccGGGGCCGCggaCACGu -3'
miRNA:   3'- gGgUGUCGGCGC---------UCUCGGCGag-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 70665 0.73 0.329743
Target:  5'- gCCGCGGCCGCG--GGCCGCaccUCCAg- -3'
miRNA:   3'- gGGUGUCGGCGCucUCGGCG---AGGUgc -5'
23813 3' -60.9 NC_005261.1 + 99039 0.72 0.337014
Target:  5'- gCCCACAGCaccCGCGcGAGCUGCagCUGCGu -3'
miRNA:   3'- -GGGUGUCG---GCGCuCUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 49298 0.72 0.337014
Target:  5'- gCCCGCGGCgGUGAGcGCCGCgcagCCcuCGa -3'
miRNA:   3'- -GGGUGUCGgCGCUCuCGGCGa---GGu-GC- -5'
23813 3' -60.9 NC_005261.1 + 67430 0.72 0.343657
Target:  5'- gCCCGCGGCCaGCGcccaaagGGcAGCCGgUCCGCc -3'
miRNA:   3'- -GGGUGUCGG-CGC-------UC-UCGGCgAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 58728 0.72 0.3444
Target:  5'- aCCGCcGCCGCGcAGAGCgCGCUguuaagaaacucCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGC-UCUCG-GCGA------------GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.