miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 87932 0.71 0.391124
Target:  5'- aCCCGgGGCC-UG-GAGCCGCgcgccgCCACGg -3'
miRNA:   3'- -GGGUgUCGGcGCuCUCGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 67294 0.71 0.391124
Target:  5'- cCCCGCcGCCGCGcGcgcgccgccgucGGCCGCcgCCGCGc -3'
miRNA:   3'- -GGGUGuCGGCGCuC------------UCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 123005 0.71 0.391124
Target:  5'- aCUACGGCCGCGGccGUgGCgUCCGCGa -3'
miRNA:   3'- gGGUGUCGGCGCUcuCGgCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 114495 0.71 0.391124
Target:  5'- cCUCAuCAGCCGCGAuGAgGCCGUgcaCACGa -3'
miRNA:   3'- -GGGU-GUCGGCGCU-CU-CGGCGag-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 134354 0.71 0.399304
Target:  5'- cCCCGCGccGCCGCGcggGGGGCgGCgCCGCu -3'
miRNA:   3'- -GGGUGU--CGGCGC---UCUCGgCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 97196 0.71 0.399304
Target:  5'- gCCGCGGCCG-GaAGcGCCGCggCCACGc -3'
miRNA:   3'- gGGUGUCGGCgC-UCuCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 55579 0.71 0.399304
Target:  5'- cCCCGCAGuCCGCGGcGGcGUCGC-CCAUGc -3'
miRNA:   3'- -GGGUGUC-GGCGCU-CU-CGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 106221 0.71 0.399304
Target:  5'- gCCCGCGGCCGCcuGGcGCgGCcgCCGCGc -3'
miRNA:   3'- -GGGUGUCGGCGc-UCuCGgCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 53041 0.71 0.399304
Target:  5'- gCCgggGCAGCCGUcggGAGGGCaguGCUCCACc -3'
miRNA:   3'- gGG---UGUCGGCG---CUCUCGg--CGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 31773 0.71 0.399304
Target:  5'- aCCUGCGcGCCGCG-GuGCUGC-CCGCGg -3'
miRNA:   3'- -GGGUGU-CGGCGCuCuCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 10957 0.71 0.399304
Target:  5'- gCCCcCAGaCGCGuGGGCCGCcCCGCc -3'
miRNA:   3'- -GGGuGUCgGCGCuCUCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 104776 0.71 0.406758
Target:  5'- aCCCGCucgaacaGGCCGCGAucGCgUGCUCCAgCGg -3'
miRNA:   3'- -GGGUG-------UCGGCGCUcuCG-GCGAGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 82557 0.71 0.407592
Target:  5'- gCCCGCGGCCGCGcGccgcAGCaGCUCgCGCa -3'
miRNA:   3'- -GGGUGUCGGCGCuC----UCGgCGAG-GUGc -5'
23813 3' -60.9 NC_005261.1 + 69260 0.71 0.407592
Target:  5'- gCCCGC-GCCGacccCGGcGAGCCGC-CCGCGc -3'
miRNA:   3'- -GGGUGuCGGC----GCU-CUCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 100367 0.71 0.407592
Target:  5'- uUCACGGCgGCGAccgaGGCCGCcUCCACc -3'
miRNA:   3'- gGGUGUCGgCGCUc---UCGGCG-AGGUGc -5'
23813 3' -60.9 NC_005261.1 + 90466 0.71 0.415142
Target:  5'- gCgCGCAcGUgCGCGAGAGCCugcucagcgugcuGCUCCGCGa -3'
miRNA:   3'- -GgGUGU-CG-GCGCUCUCGG-------------CGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 31053 0.71 0.415987
Target:  5'- cCCCAgcGCgGCGGGAGCCGCcgcugcccgcCCGCGu -3'
miRNA:   3'- -GGGUguCGgCGCUCUCGGCGa---------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 32246 0.71 0.415987
Target:  5'- -gCGCGGCCGCGcugcuGGAGCCGCacgCCGa- -3'
miRNA:   3'- ggGUGUCGGCGC-----UCUCGGCGa--GGUgc -5'
23813 3' -60.9 NC_005261.1 + 108750 0.71 0.415987
Target:  5'- gCCGCGGCgucCGCGGcGcGCCGCgCCACGg -3'
miRNA:   3'- gGGUGUCG---GCGCU-CuCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 135031 0.71 0.415987
Target:  5'- gCCGCGGCgGCGAG-GCCGacgCCuGCGg -3'
miRNA:   3'- gGGUGUCGgCGCUCuCGGCga-GG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.