miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 28235 0.66 0.71005
Target:  5'- cCCCcCGGCgcgcgcgauaGCGGGGGCUGCUCgGgGg -3'
miRNA:   3'- -GGGuGUCGg---------CGCUCUCGGCGAGgUgC- -5'
23813 3' -60.9 NC_005261.1 + 55143 0.66 0.71005
Target:  5'- gCCGCAagaugugcGCgCGCGAGcGCCGCcgCCGgCGg -3'
miRNA:   3'- gGGUGU--------CG-GCGCUCuCGGCGa-GGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 102050 0.66 0.709084
Target:  5'- cCCCGucgcgaugugcauCAGCCGCGucAGCUGgC-CCACGu -3'
miRNA:   3'- -GGGU-------------GUCGGCGCucUCGGC-GaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 10107 0.66 0.707151
Target:  5'- cCCgGCAGCgGCGGcGAcagccaccaccaccGCCGCcaugagCCACGg -3'
miRNA:   3'- -GGgUGUCGgCGCU-CU--------------CGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 136885 0.66 0.707151
Target:  5'- -gCGCGGCCgaugaaguguacugGCGugguguGGGCCGCgcggCCGCGg -3'
miRNA:   3'- ggGUGUCGG--------------CGCu-----CUCGGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2505 0.66 0.704246
Target:  5'- gUCCGCgAGCCGCGccgcgaccucggggcGGcaguaGGCCGCcagcgCCGCGg -3'
miRNA:   3'- -GGGUG-UCGGCGC---------------UC-----UCGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121386 0.66 0.704246
Target:  5'- cCCCGCGGCgGCGGcgccugcccgagugcGAcggcuGCCGCcgCCGCu -3'
miRNA:   3'- -GGGUGUCGgCGCU---------------CU-----CGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 121861 0.66 0.700365
Target:  5'- gCCCGCGGCuccCGCc-GAGCCGCaUCgACu -3'
miRNA:   3'- -GGGUGUCG---GCGcuCUCGGCG-AGgUGc -5'
23813 3' -60.9 NC_005261.1 + 124092 0.66 0.700365
Target:  5'- gCCCGCguAGCgCGCGcacAGGGCCgGCaCCGCa -3'
miRNA:   3'- -GGGUG--UCG-GCGC---UCUCGG-CGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 67634 0.66 0.700365
Target:  5'- aCCACGuacGCCGaGAacgcGGGCCGCccgUCCGCGc -3'
miRNA:   3'- gGGUGU---CGGCgCU----CUCGGCG---AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 31530 0.66 0.700365
Target:  5'- aCCgGCuGCUGCuGAGcGCCGaCUCgCACGc -3'
miRNA:   3'- -GGgUGuCGGCG-CUCuCGGC-GAG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 13662 0.66 0.700365
Target:  5'- gCCGCcGCCGCGGGGGgggCGCggggCgCGCGg -3'
miRNA:   3'- gGGUGuCGGCGCUCUCg--GCGa---G-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 39374 0.66 0.700365
Target:  5'- aUCgGCGGCCgGgGAGGGCgGC-CCugGc -3'
miRNA:   3'- -GGgUGUCGG-CgCUCUCGgCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 107852 0.66 0.700365
Target:  5'- gCCGCcGCCGCccucgccGGCCGC-CCGCGc -3'
miRNA:   3'- gGGUGuCGGCGcuc----UCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29577 0.66 0.700365
Target:  5'- gCUGCAGCgGCGcgugcAGGGCUGCcggggCCACa -3'
miRNA:   3'- gGGUGUCGgCGC-----UCUCGGCGa----GGUGc -5'
23813 3' -60.9 NC_005261.1 + 57382 0.66 0.700365
Target:  5'- gCCCgccaGCAGCuCG-GGGAGCgCGCccgugaUCCGCGg -3'
miRNA:   3'- -GGG----UGUCG-GCgCUCUCG-GCG------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 37727 0.66 0.697449
Target:  5'- gCCCGCcggAGCCccccgucgccccccGCGGGcGCCGCgCCGCc -3'
miRNA:   3'- -GGGUG---UCGG--------------CGCUCuCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 37920 0.66 0.697449
Target:  5'- gCCACcGCUGCGcgaguacgagcgccGGAGCCGCgUCgaGCGg -3'
miRNA:   3'- gGGUGuCGGCGC--------------UCUCGGCG-AGg-UGC- -5'
23813 3' -60.9 NC_005261.1 + 65373 0.66 0.694529
Target:  5'- gCCCGCAcgcccggcauuaccuGCgGCGGGuugggcGGCCccggcaGCUCCACGu -3'
miRNA:   3'- -GGGUGU---------------CGgCGCUC------UCGG------CGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2418 0.66 0.690628
Target:  5'- cCCCGC-GCgGCGGcGGGCCGCgaucucggCCAgCGc -3'
miRNA:   3'- -GGGUGuCGgCGCU-CUCGGCGa-------GGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.