Results 61 - 80 of 381 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23813 | 3' | -60.9 | NC_005261.1 | + | 110959 | 0.66 | 0.671024 |
Target: 5'- gCCCAC--CCGgGAGAGCUGCauguacgCCGCc -3' miRNA: 3'- -GGGUGucGGCgCUCUCGGCGa------GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 112571 | 0.66 | 0.671024 |
Target: 5'- gCCUACcucgagGGCUGCGAGGGCgucguguggaCGCUCUucgACGa -3' miRNA: 3'- -GGGUG------UCGGCGCUCUCG----------GCGAGG---UGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 29824 | 0.66 | 0.671024 |
Target: 5'- gCCCGC-GCCGCGcucgccGAGCUGCgcgCCGu- -3' miRNA: 3'- -GGGUGuCGGCGCu-----CUCGGCGa--GGUgc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 58423 | 0.66 | 0.671024 |
Target: 5'- aCUGCAGCCGcCGcGAGaaGC-CCACGc -3' miRNA: 3'- gGGUGUCGGC-GCuCUCggCGaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 137793 | 0.66 | 0.671024 |
Target: 5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3' miRNA: 3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 110 | 0.66 | 0.671024 |
Target: 5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3' miRNA: 3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 67534 | 0.66 | 0.671024 |
Target: 5'- gCCCGCGGCgGCGAacGUCGCgUCGCc -3' miRNA: 3'- -GGGUGUCGgCGCUcuCGGCGaGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 34336 | 0.66 | 0.671024 |
Target: 5'- cCCCaaggggccgggGCGGCCGaCGGGGccgggcGCCGCgcggcgCCGCGc -3' miRNA: 3'- -GGG-----------UGUCGGC-GCUCU------CGGCGa-----GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 60262 | 0.66 | 0.671024 |
Target: 5'- gCgGCGGCCGUGaAGAGgCGC-CCGgGg -3' miRNA: 3'- gGgUGUCGGCGC-UCUCgGCGaGGUgC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 50012 | 0.66 | 0.661174 |
Target: 5'- gCCGcCAGCgCGCGGGcgcccAGCCGC-CgCGCGa -3' miRNA: 3'- gGGU-GUCG-GCGCUC-----UCGGCGaG-GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 71439 | 0.66 | 0.661174 |
Target: 5'- gCCCGCGGCgCGC-AGccGCCGcCUCC-CGg -3' miRNA: 3'- -GGGUGUCG-GCGcUCu-CGGC-GAGGuGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 94256 | 0.66 | 0.661174 |
Target: 5'- gCCACGG-CGC-AGGGCgGCgCCGCGa -3' miRNA: 3'- gGGUGUCgGCGcUCUCGgCGaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 89171 | 0.66 | 0.661174 |
Target: 5'- aCUGCA-CCGCGgacaaccuGGAGCCGCU-CGCGg -3' miRNA: 3'- gGGUGUcGGCGC--------UCUCGGCGAgGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 81474 | 0.66 | 0.661174 |
Target: 5'- gCCCAC-GCCGCccagagcAGGGCCGCggcuagCGCGg -3' miRNA: 3'- -GGGUGuCGGCGc------UCUCGGCGag----GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 45031 | 0.66 | 0.660187 |
Target: 5'- uCCCGCgcuuccucugcgaGGuCCGCGAaauccuggcgGGGCCGC-CCACu -3' miRNA: 3'- -GGGUG-------------UC-GGCGCU----------CUCGGCGaGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 106135 | 0.66 | 0.658214 |
Target: 5'- gCCgGCAacgccggacaugguGCCGCcuc-GCCGCUCCGCGc -3' miRNA: 3'- -GGgUGU--------------CGGCGcucuCGGCGAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 57784 | 0.67 | 0.654265 |
Target: 5'- gUCCGCGGCgucgcgcggcgggcgCGCGAaGGCCGUgaaggcgaaggggUCCACGu -3' miRNA: 3'- -GGGUGUCG---------------GCGCUcUCGGCG-------------AGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 1176 | 0.67 | 0.651302 |
Target: 5'- gCCCGC-GCCGCGgccGGGGCCGgggCCGgGc -3' miRNA: 3'- -GGGUGuCGGCGC---UCUCGGCga-GGUgC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 68161 | 0.67 | 0.651302 |
Target: 5'- gCUACAcGCgCGCG-GAGCuCGCgcgcgCCGCGg -3' miRNA: 3'- gGGUGU-CG-GCGCuCUCG-GCGa----GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 33463 | 0.67 | 0.651302 |
Target: 5'- gCCGCAGCCGCcgccgcagccGGGcCCGCU-CGCGg -3' miRNA: 3'- gGGUGUCGGCGcu--------CUC-GGCGAgGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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