miRNA display CGI


Results 41 - 60 of 381 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 18932 0.7 0.459491
Target:  5'- cCCCAaGGCCGCGcugaaggcGGGgUGCUCCGCa -3'
miRNA:   3'- -GGGUgUCGGCGCu-------CUCgGCGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 19037 0.66 0.71005
Target:  5'- --gGCAGCCG-GAGAGCCGC-CagGCa -3'
miRNA:   3'- gggUGUCGGCgCUCUCGGCGaGg-UGc -5'
23813 3' -60.9 NC_005261.1 + 19996 0.68 0.562662
Target:  5'- uCCC-CGGCCGCGGccccuGAcCCGCacccgUCCGCGg -3'
miRNA:   3'- -GGGuGUCGGCGCU-----CUcGGCG-----AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 20109 0.73 0.295138
Target:  5'- uUCCGCGGCaaggcgCGCGGGcccgcAGCgGCUCCGCGa -3'
miRNA:   3'- -GGGUGUCG------GCGCUC-----UCGgCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 20218 0.71 0.424487
Target:  5'- cCCCGCGcccGCUGCcuGGccAGCCGCUCCGCc -3'
miRNA:   3'- -GGGUGU---CGGCGc-UC--UCGGCGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 20348 0.68 0.560718
Target:  5'- gCCCGCGGCUGcCGcGAGCCGUacuuaagccucaCCAUGg -3'
miRNA:   3'- -GGGUGUCGGC-GCuCUCGGCGa-----------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21184 0.68 0.573389
Target:  5'- gCCGCuGgCGCGAGcgcGGCCGCggacgcuggccccggCCGCGa -3'
miRNA:   3'- gGGUGuCgGCGCUC---UCGGCGa--------------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21411 0.66 0.719672
Target:  5'- uCCCGC-GCCGCGccGGCCGgugcaguucUUCCGCc -3'
miRNA:   3'- -GGGUGuCGGCGCucUCGGC---------GAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 21636 0.67 0.641415
Target:  5'- cCCCGCcccGgCGCG-GAcGCCGCUgCCGCa -3'
miRNA:   3'- -GGGUGu--CgGCGCuCU-CGGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 21798 0.72 0.351903
Target:  5'- gCCGCAGCCGcCGGccGGGCCGggcCCGCGg -3'
miRNA:   3'- gGGUGUCGGC-GCU--CUCGGCga-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21853 0.67 0.650314
Target:  5'- cCCCGCAGCugacgcucgcgcuCGCGAacGCgCGC-CCGCGg -3'
miRNA:   3'- -GGGUGUCG-------------GCGCUcuCG-GCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 22808 0.66 0.719672
Target:  5'- gCCgGCGGCgGCGcu-GCCGCcgCCGCc -3'
miRNA:   3'- -GGgUGUCGgCGCucuCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 23209 0.66 0.719672
Target:  5'- gCCCGCAGCgGCG---GCCGCg-CGCa -3'
miRNA:   3'- -GGGUGUCGgCGCucuCGGCGagGUGc -5'
23813 3' -60.9 NC_005261.1 + 23472 0.7 0.468481
Target:  5'- gCCCGCGGCgGCGAGuGC-GCgggcccgCCugGg -3'
miRNA:   3'- -GGGUGUCGgCGCUCuCGgCGa------GGugC- -5'
23813 3' -60.9 NC_005261.1 + 27423 0.7 0.450595
Target:  5'- cCCCgACGGCCGCgcauauuacaauGAGuuuggcggcgGGCCGCcCCGCGg -3'
miRNA:   3'- -GGG-UGUCGGCG------------CUC----------UCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 28198 0.67 0.62163
Target:  5'- gCCgGCGGCCuCGcc-GCCGCUgCCGCGg -3'
miRNA:   3'- -GGgUGUCGGcGCucuCGGCGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 28235 0.66 0.71005
Target:  5'- cCCCcCGGCgcgcgcgauaGCGGGGGCUGCUCgGgGg -3'
miRNA:   3'- -GGGuGUCGg---------CGCUCUCGGCGAGgUgC- -5'
23813 3' -60.9 NC_005261.1 + 28287 0.66 0.713906
Target:  5'- gCCGCGGCCGCGGucGUcuccuucguucgcggCGC-CCGCGc -3'
miRNA:   3'- gGGUGUCGGCGCUcuCG---------------GCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 28568 0.7 0.441793
Target:  5'- gCCCGCcgggccgaGGCgCGCGAGcgccggcgGGCCGC-CCGCGc -3'
miRNA:   3'- -GGGUG--------UCG-GCGCUC--------UCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 28760 0.73 0.308631
Target:  5'- gCCGCGGCCGgGGGcgccugGGCCGCggCGCGg -3'
miRNA:   3'- gGGUGUCGGCgCUC------UCGGCGagGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.