miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 28795 0.69 0.495972
Target:  5'- gCUCGCGGCCGCGgcggaGGcAGCCGCcgCCGa- -3'
miRNA:   3'- -GGGUGUCGGCGC-----UC-UCGGCGa-GGUgc -5'
23813 3' -60.9 NC_005261.1 + 29242 0.74 0.288565
Target:  5'- gCCGCGGCgccgCGCGAcGGGCCGCcgCCGCu -3'
miRNA:   3'- gGGUGUCG----GCGCU-CUCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 29388 0.68 0.543305
Target:  5'- cCCCGagauCCGCGAGgcGGCCGCgcgCUACGc -3'
miRNA:   3'- -GGGUguc-GGCGCUC--UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29419 0.68 0.582201
Target:  5'- gCgGCGGCCGCGGGGcCCGCggCCGu- -3'
miRNA:   3'- gGgUGUCGGCGCUCUcGGCGa-GGUgc -5'
23813 3' -60.9 NC_005261.1 + 29577 0.66 0.700365
Target:  5'- gCUGCAGCgGCGcgugcAGGGCUGCcggggCCACa -3'
miRNA:   3'- gGGUGUCGgCGC-----UCUCGGCGa----GGUGc -5'
23813 3' -60.9 NC_005261.1 + 29662 0.66 0.680845
Target:  5'- gCCAUGGCCGCGcAGAacgcgcugugGgCGCUgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGC-UCU----------CgGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 29701 0.67 0.641415
Target:  5'- gUgGCGGCCuGCGuggccauGAGCCGCcgCUACGa -3'
miRNA:   3'- gGgUGUCGG-CGCu------CUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29824 0.66 0.671024
Target:  5'- gCCCGC-GCCGCGcucgccGAGCUGCgcgCCGu- -3'
miRNA:   3'- -GGGUGuCGGCGCu-----CUCGGCGa--GGUgc -5'
23813 3' -60.9 NC_005261.1 + 29856 0.67 0.650314
Target:  5'- gCUCGcCGGCCGCGcggcgccGGcGCCGCUgCCGCc -3'
miRNA:   3'- -GGGU-GUCGGCGC-------UCuCGGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 29901 0.75 0.229089
Target:  5'- gCCCGCGGCagCGCGcGAGCgGCUgCGCGa -3'
miRNA:   3'- -GGGUGUCG--GCGCuCUCGgCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 31053 0.71 0.415987
Target:  5'- cCCCAgcGCgGCGGGAGCCGCcgcugcccgcCCGCGu -3'
miRNA:   3'- -GGGUguCGgCGCUCUCGGCGa---------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 31301 0.7 0.459491
Target:  5'- gCCCGCcGCCGCGcGGGGCcCGCgggCGCGc -3'
miRNA:   3'- -GGGUGuCGGCGC-UCUCG-GCGag-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 31530 0.66 0.700365
Target:  5'- aCCgGCuGCUGCuGAGcGCCGaCUCgCACGc -3'
miRNA:   3'- -GGgUGuCGGCG-CUCuCGGC-GAG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 31773 0.71 0.399304
Target:  5'- aCCUGCGcGCCGCG-GuGCUGC-CCGCGg -3'
miRNA:   3'- -GGGUGU-CGGCGCuCuCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 32246 0.71 0.415987
Target:  5'- -gCGCGGCCGCGcugcuGGAGCCGCacgCCGa- -3'
miRNA:   3'- ggGUGUCGGCGC-----UCUCGGCGa--GGUgc -5'
23813 3' -60.9 NC_005261.1 + 32320 0.68 0.543305
Target:  5'- gCCGCGGCCGCG-GcGCCcgGCguggCCugGg -3'
miRNA:   3'- gGGUGUCGGCGCuCuCGG--CGa---GGugC- -5'
23813 3' -60.9 NC_005261.1 + 32486 0.67 0.651302
Target:  5'- uCCCGgGGCCgGCGAcGGCgGCaUCgGCGg -3'
miRNA:   3'- -GGGUgUCGG-CGCUcUCGgCG-AGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 32541 0.67 0.601874
Target:  5'- gCCC-CGGCCGCGGcgcGGGCCgGCg-CGCGu -3'
miRNA:   3'- -GGGuGUCGGCGCU---CUCGG-CGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 32738 0.71 0.383055
Target:  5'- gUCCGCucuGCgCGCGGcccGCCGCUCUACGg -3'
miRNA:   3'- -GGGUGu--CG-GCGCUcu-CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33162 0.69 0.533707
Target:  5'- aCCGC-GCgGCGGccGAGCCGCcgUCCGCc -3'
miRNA:   3'- gGGUGuCGgCGCU--CUCGGCG--AGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.