miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 33357 0.68 0.592023
Target:  5'- gCCACcGCCGCc-GGGCCGCgccgggCUGCGg -3'
miRNA:   3'- gGGUGuCGGCGcuCUCGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33391 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 33427 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 33463 0.67 0.651302
Target:  5'- gCCGCAGCCGCcgccgcagccGGGcCCGCU-CGCGg -3'
miRNA:   3'- gGGUGUCGGCGcu--------CUC-GGCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33693 0.75 0.234537
Target:  5'- cCCCGgGGUCGCGcGGGGcCCGCUgCACGa -3'
miRNA:   3'- -GGGUgUCGGCGC-UCUC-GGCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 34336 0.66 0.671024
Target:  5'- cCCCaaggggccgggGCGGCCGaCGGGGccgggcGCCGCgcggcgCCGCGc -3'
miRNA:   3'- -GGG-----------UGUCGGC-GCUCU------CGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 35047 0.69 0.495972
Target:  5'- gCCCuaacgGCGGCCGCGcGGcGGCgGuCUCCGCGc -3'
miRNA:   3'- -GGG-----UGUCGGCGC-UC-UCGgC-GAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 35091 0.66 0.71005
Target:  5'- cCUCGgAGCCGCGGuGAGCgGCgagccccccagCCGCc -3'
miRNA:   3'- -GGGUgUCGGCGCU-CUCGgCGa----------GGUGc -5'
23813 3' -60.9 NC_005261.1 + 36589 0.67 0.611745
Target:  5'- gCCGCGGCCaccggGgGGGGGCagCGCUCCuGCGc -3'
miRNA:   3'- gGGUGUCGG-----CgCUCUCG--GCGAGG-UGC- -5'
23813 3' -60.9 NC_005261.1 + 37727 0.66 0.697449
Target:  5'- gCCCGCcggAGCCccccgucgccccccGCGGGcGCCGCgCCGCc -3'
miRNA:   3'- -GGGUG---UCGG--------------CGCUCuCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 37920 0.66 0.697449
Target:  5'- gCCACcGCUGCGcgaguacgagcgccGGAGCCGCgUCgaGCGg -3'
miRNA:   3'- gGGUGuCGGCGC--------------UCUCGGCG-AGg-UGC- -5'
23813 3' -60.9 NC_005261.1 + 38162 0.7 0.430498
Target:  5'- cCCCGCGGCCGCagcacggcugccugGAG-GCCuggGCgcgCCGCGg -3'
miRNA:   3'- -GGGUGUCGGCG--------------CUCuCGG---CGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 38603 0.7 0.450595
Target:  5'- gCCCGCGGCUgGCGGGuguuGGCCGCggCCGa- -3'
miRNA:   3'- -GGGUGUCGG-CGCUC----UCGGCGa-GGUgc -5'
23813 3' -60.9 NC_005261.1 + 38734 0.7 0.47756
Target:  5'- gCCCGCAGagcccgggcCCGCGccAGAGCCGgaCC-CGg -3'
miRNA:   3'- -GGGUGUC---------GGCGC--UCUCGGCgaGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 38937 0.72 0.35952
Target:  5'- gCCgGCGGCCGgGcGGGCCGCggCGCGc -3'
miRNA:   3'- -GGgUGUCGGCgCuCUCGGCGagGUGC- -5'
23813 3' -60.9 NC_005261.1 + 39013 0.7 0.433089
Target:  5'- gCCCACGcGCagaGCGuccgcGAGCaGCUCCACGc -3'
miRNA:   3'- -GGGUGU-CGg--CGCu----CUCGgCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 39374 0.66 0.700365
Target:  5'- aUCgGCGGCCgGgGAGGGCgGC-CCugGc -3'
miRNA:   3'- -GGgUGUCGG-CgCUCUCGgCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 40243 0.67 0.611745
Target:  5'- cCCgGgGGCCGUGAGcgccauGGCgGCggCCGCGg -3'
miRNA:   3'- -GGgUgUCGGCGCUC------UCGgCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 40613 0.67 0.611745
Target:  5'- -aCACgaAGCCGCGcuGGUCGCggaCCACGa -3'
miRNA:   3'- ggGUG--UCGGCGCucUCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 42167 0.76 0.213383
Target:  5'- gCCggaaGCgAGCCGUGGacgcagggcgcGAGCCGCUCCACGg -3'
miRNA:   3'- -GGg---UG-UCGGCGCU-----------CUCGGCGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.