miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 127324 0.67 0.641415
Target:  5'- cCCUGCcGcCCGCGGGGGCCGgagCgGCGg -3'
miRNA:   3'- -GGGUGuC-GGCGCUCUCGGCga-GgUGC- -5'
23813 3' -60.9 NC_005261.1 + 127278 0.7 0.47756
Target:  5'- gCCCGCccGCCGCGGGGGCagccCUCCcCGc -3'
miRNA:   3'- -GGGUGu-CGGCGCUCUCGgc--GAGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 126882 0.68 0.562662
Target:  5'- gCCCGCAGCaGCGcAGGGCC-CUCgGgGa -3'
miRNA:   3'- -GGGUGUCGgCGC-UCUCGGcGAGgUgC- -5'
23813 3' -60.9 NC_005261.1 + 126030 0.69 0.505298
Target:  5'- gCCgCGCGGCCGCGcguacGAGugcucCCGCUCCGgCGc -3'
miRNA:   3'- -GG-GUGUCGGCGCu----CUC-----GGCGAGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 125336 0.67 0.651302
Target:  5'- gUCCGCAGCgCGCaGGGcguccAGCagGCUCCGCc -3'
miRNA:   3'- -GGGUGUCG-GCG-CUC-----UCGg-CGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 125281 0.73 0.329743
Target:  5'- gCCGCuggaagucaGGCCGCGGGcGCCggacccgcgggcGCUCCGCGg -3'
miRNA:   3'- gGGUG---------UCGGCGCUCuCGG------------CGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 124906 0.71 0.391124
Target:  5'- cCCCGCcGCCacGCGGGaAGCCGCggaggcuccgCCGCGc -3'
miRNA:   3'- -GGGUGuCGG--CGCUC-UCGGCGa---------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 124748 0.78 0.155657
Target:  5'- cCCCGCAGCCGC-AGcGGCCGcCUCCAgGc -3'
miRNA:   3'- -GGGUGUCGGCGcUC-UCGGC-GAGGUgC- -5'
23813 3' -60.9 NC_005261.1 + 124240 0.7 0.441793
Target:  5'- aCCGCcGCCGCGGGcaggcGCCGCgcggcgCCGCc -3'
miRNA:   3'- gGGUGuCGGCGCUCu----CGGCGa-----GGUGc -5'
23813 3' -60.9 NC_005261.1 + 124092 0.66 0.700365
Target:  5'- gCCCGCguAGCgCGCGcacAGGGCCgGCaCCGCa -3'
miRNA:   3'- -GGGUG--UCG-GCGC---UCUCGG-CGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 123939 0.72 0.374308
Target:  5'- gCCCgcuagauACAGCCaGCGcAGcGcCCGCUCCGCGa -3'
miRNA:   3'- -GGG-------UGUCGG-CGC-UCuC-GGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 123321 0.66 0.690628
Target:  5'- gCCCAagcacCGGCCGCGAaccuAGCgGCU-CGCGg -3'
miRNA:   3'- -GGGU-----GUCGGCGCUc---UCGgCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 123005 0.71 0.391124
Target:  5'- aCUACGGCCGCGGccGUgGCgUCCGCGa -3'
miRNA:   3'- gGGUGUCGGCGCUcuCGgCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121861 0.66 0.700365
Target:  5'- gCCCGCGGCuccCGCc-GAGCCGCaUCgACu -3'
miRNA:   3'- -GGGUGUCG---GCGcuCUCGGCG-AGgUGc -5'
23813 3' -60.9 NC_005261.1 + 121642 0.66 0.719672
Target:  5'- gCCGCcGCCgGCGAGcgcgGGCUG-UCCGCGu -3'
miRNA:   3'- gGGUGuCGG-CGCUC----UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121386 0.66 0.704246
Target:  5'- cCCCGCGGCgGCGGcgccugcccgagugcGAcggcuGCCGCcgCCGCu -3'
miRNA:   3'- -GGGUGUCGgCGCU---------------CU-----CGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 121203 0.68 0.582201
Target:  5'- gCCCGgGGCCGCGggccGGAGaCUGCagcaCCGCa -3'
miRNA:   3'- -GGGUgUCGGCGC----UCUC-GGCGa---GGUGc -5'
23813 3' -60.9 NC_005261.1 + 121022 0.71 0.391124
Target:  5'- aCCCGCuGgCGCGGGAGaaGCgccgCCACa -3'
miRNA:   3'- -GGGUGuCgGCGCUCUCggCGa---GGUGc -5'
23813 3' -60.9 NC_005261.1 + 120013 0.68 0.572412
Target:  5'- -aCGCGGCCGUGu--GCCGCgCCGCc -3'
miRNA:   3'- ggGUGUCGGCGCucuCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 119534 0.69 0.505298
Target:  5'- cCCCGCGGCCGagcaAGGccccGCCGCggggCCGCa -3'
miRNA:   3'- -GGGUGUCGGCgc--UCU----CGGCGa---GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.