miRNA display CGI


Results 41 - 60 of 381 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 119128 0.72 0.374308
Target:  5'- gCCGCGGCCGCGgcgcggccaucucGGAuCCGC-CCGCGc -3'
miRNA:   3'- gGGUGUCGGCGC-------------UCUcGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 119056 0.7 0.441793
Target:  5'- gCCCGCGGCCGCGcGugugcuuucguGGcCCGggCCACGa -3'
miRNA:   3'- -GGGUGUCGGCGCuC-----------UC-GGCgaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118974 0.66 0.684763
Target:  5'- uCCUGCAcGCCGCGcugugcuucugcgucGGGGCCuGCUgggcCCGCGc -3'
miRNA:   3'- -GGGUGU-CGGCGC---------------UCUCGG-CGA----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118926 0.69 0.514699
Target:  5'- gCCGCGGgCGCG-GcGCCGCgcggcuggCCGCGg -3'
miRNA:   3'- gGGUGUCgGCGCuCuCGGCGa-------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118823 0.71 0.391124
Target:  5'- gCCCugGG-CGCGGcacuGCCGCUCUGCGg -3'
miRNA:   3'- -GGGugUCgGCGCUcu--CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118635 0.67 0.651302
Target:  5'- gCCGCGGCgGCGcucuGGGCCcCgggCCGCGc -3'
miRNA:   3'- gGGUGUCGgCGCu---CUCGGcGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118577 0.68 0.552958
Target:  5'- gCgCGCGGCgGCGcGcGCCGCcgCCGCGg -3'
miRNA:   3'- -GgGUGUCGgCGCuCuCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118545 0.69 0.52417
Target:  5'- cCCUGCGGCgcgCGCGAGGacGCCGUgcCCGCGc -3'
miRNA:   3'- -GGGUGUCG---GCGCUCU--CGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118397 0.79 0.134097
Target:  5'- gCUgGCGGCCGCGGGcGCCGCagCCGCGc -3'
miRNA:   3'- -GGgUGUCGGCGCUCuCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118233 0.7 0.47756
Target:  5'- gCCGCGGCCGCGGccuacGCCG-UCUGCGg -3'
miRNA:   3'- gGGUGUCGGCGCUcu---CGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118185 0.7 0.441793
Target:  5'- gUCugGGCCGCGGGccCCGCgccugCCGCGc -3'
miRNA:   3'- gGGugUCGGCGCUCucGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118058 0.73 0.322589
Target:  5'- gCUgGCGGCCGCGGcagcGGCCGCagCCGCGc -3'
miRNA:   3'- -GGgUGUCGGCGCUc---UCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116918 0.67 0.611745
Target:  5'- gUCgACAGCCGcCGcGGGCUGCuggacgccuUCCGCGc -3'
miRNA:   3'- -GGgUGUCGGC-GCuCUCGGCG---------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116771 0.66 0.684763
Target:  5'- gCCUuucugguauuCAGCCGCGAGGGCaUGCuggugcacaguggccUCUACGa -3'
miRNA:   3'- -GGGu---------GUCGGCGCUCUCG-GCG---------------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116649 0.68 0.543305
Target:  5'- gCCCGCGcgcccGCCGCc-GAcCUGCUCCGCGg -3'
miRNA:   3'- -GGGUGU-----CGGCGcuCUcGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116517 0.83 0.070866
Target:  5'- gCCGCGGCggCGCGAGGcccGCCGCUCCGCGc -3'
miRNA:   3'- gGGUGUCG--GCGCUCU---CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116140 0.7 0.430498
Target:  5'- aUCCGCAGCaGCGAGAggaagcagcgcgcgGUCGCggCCGCGu -3'
miRNA:   3'- -GGGUGUCGgCGCUCU--------------CGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116065 0.67 0.641415
Target:  5'- cCCCGCGuGgCGCGccgguccccguGGAuGCCGCggUCCGCGa -3'
miRNA:   3'- -GGGUGU-CgGCGC-----------UCU-CGGCG--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 115425 0.68 0.562662
Target:  5'- gCCGgGGCCGCGGcccGAGCuCGCgcUCGCGg -3'
miRNA:   3'- gGGUgUCGGCGCU---CUCG-GCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 114495 0.71 0.391124
Target:  5'- cCUCAuCAGCCGCGAuGAgGCCGUgcaCACGa -3'
miRNA:   3'- -GGGU-GUCGGCGCU-CU-CGGCGag-GUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.