miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 113300 0.7 0.47756
Target:  5'- uCUCGCuGCCGCGGGccugGGCCcgGCUgCGCGa -3'
miRNA:   3'- -GGGUGuCGGCGCUC----UCGG--CGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 112571 0.66 0.671024
Target:  5'- gCCUACcucgagGGCUGCGAGGGCgucguguggaCGCUCUucgACGa -3'
miRNA:   3'- -GGGUG------UCGGCGCUCUCG----------GCGAGG---UGC- -5'
23813 3' -60.9 NC_005261.1 + 110959 0.66 0.671024
Target:  5'- gCCCAC--CCGgGAGAGCUGCauguacgCCGCc -3'
miRNA:   3'- -GGGUGucGGCgCUCUCGGCGa------GGUGc -5'
23813 3' -60.9 NC_005261.1 + 109794 0.68 0.562662
Target:  5'- gCCGCuGCUGCGAcGGccggcGCCGCUuccgCCGCGg -3'
miRNA:   3'- gGGUGuCGGCGCU-CU-----CGGCGA----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 109504 0.7 0.459491
Target:  5'- gCCCGCGcccGCCGCGGGGuuuauuGCgCGCccgCCGCGg -3'
miRNA:   3'- -GGGUGU---CGGCGCUCU------CG-GCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 109439 0.68 0.55199
Target:  5'- aCCCgACcGCCGCcaGAGAGgcaacccCCGCUUCGCGc -3'
miRNA:   3'- -GGG-UGuCGGCG--CUCUC-------GGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 109332 0.7 0.450595
Target:  5'- -gCGCGGCCGCGGGgucggcGGCCGCgUCGCc -3'
miRNA:   3'- ggGUGUCGGCGCUC------UCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 109040 0.66 0.719672
Target:  5'- gCgCGCAGCCGCGc-GGCCGCcagguagCCcaGCGg -3'
miRNA:   3'- -GgGUGUCGGCGCucUCGGCGa------GG--UGC- -5'
23813 3' -60.9 NC_005261.1 + 108750 0.71 0.415987
Target:  5'- gCCGCGGCgucCGCGGcGcGCCGCgCCACGg -3'
miRNA:   3'- gGGUGUCG---GCGCU-CuCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 108380 0.67 0.631522
Target:  5'- gCCCGCGuCCGCGcccgcgcgcuccAGcAGCCGCgccaCCGCGc -3'
miRNA:   3'- -GGGUGUcGGCGC------------UC-UCGGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 108315 0.67 0.631522
Target:  5'- uCCCagACGGCCGCc---GCgUGCUCCGCGa -3'
miRNA:   3'- -GGG--UGUCGGCGcucuCG-GCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 108187 0.73 0.315552
Target:  5'- gCCGCGGCuccgggCGCGAGAGCUGCgccagCACGg -3'
miRNA:   3'- gGGUGUCG------GCGCUCUCGGCGag---GUGC- -5'
23813 3' -60.9 NC_005261.1 + 107903 0.73 0.322589
Target:  5'- gUCCGCGGCCGCggccucggccacGAGuGCCGCgcggaucgccgCCACGu -3'
miRNA:   3'- -GGGUGUCGGCG------------CUCuCGGCGa----------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107852 0.66 0.700365
Target:  5'- gCCGCcGCCGCccucgccGGCCGC-CCGCGc -3'
miRNA:   3'- gGGUGuCGGCGcuc----UCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107689 0.68 0.543305
Target:  5'- gCCGCcGCgGCGGGGGCgccgccgaacguCGCUgCCGCGg -3'
miRNA:   3'- gGGUGuCGgCGCUCUCG------------GCGA-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107416 0.66 0.719672
Target:  5'- gCCAgGGCCGaGAGcuucguccgguAGCCG-UCCACGu -3'
miRNA:   3'- gGGUgUCGGCgCUC-----------UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 107142 0.72 0.374308
Target:  5'- gCCCACGGCCGCGgccauGGAGgcggccagcgccuCCGuCUCgGCGg -3'
miRNA:   3'- -GGGUGUCGGCGC-----UCUC-------------GGC-GAGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 106915 0.67 0.641415
Target:  5'- gCCGCGGCgCGCuGcAGGGCCGCcagcgaCACGc -3'
miRNA:   3'- gGGUGUCG-GCG-C-UCUCGGCGag----GUGC- -5'
23813 3' -60.9 NC_005261.1 + 106616 0.74 0.282108
Target:  5'- uCCCAgAcGCCGCG-GAGCCGCgCgACGa -3'
miRNA:   3'- -GGGUgU-CGGCGCuCUCGGCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 106408 0.67 0.601874
Target:  5'- aUCCGCGcggcGCUGCaGcGGGCCGCggUCCACGc -3'
miRNA:   3'- -GGGUGU----CGGCG-CuCUCGGCG--AGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.