miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 82301 0.8 0.114446
Target:  5'- gCCCGaGGCUGUccaucgagcgcuucGAGAGCCGCUCCGCGu -3'
miRNA:   3'- -GGGUgUCGGCG--------------CUCUCGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 102291 0.8 0.109622
Target:  5'- gCCAgCGGCCGCGGGucguAGCCGCgcgCCGCGg -3'
miRNA:   3'- gGGU-GUCGGCGCUC----UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 100694 0.82 0.078591
Target:  5'- aCCGCGGCCGCGGcgcgcgccgcccGAGCCGCggCCGCGc -3'
miRNA:   3'- gGGUGUCGGCGCU------------CUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 4928 0.82 0.078591
Target:  5'- gCCGCGGCCGCGAGcGcCCGCgCCGCGg -3'
miRNA:   3'- gGGUGUCGGCGCUCuC-GGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116517 0.83 0.070866
Target:  5'- gCCGCGGCggCGCGAGGcccGCCGCUCCGCGc -3'
miRNA:   3'- gGGUGUCG--GCGCUCU---CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 60938 0.76 0.193889
Target:  5'- aCCCGCgGGCCGUGGcccGAGCgGCUCUACa -3'
miRNA:   3'- -GGGUG-UCGGCGCU---CUCGgCGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 3369 0.76 0.198611
Target:  5'- uUCAgGGCCGCGAGcgcGGCCGCcagCCGCGc -3'
miRNA:   3'- gGGUgUCGGCGCUC---UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 4290 0.74 0.282108
Target:  5'- -aCACGGCCGCGGGccCCGCggccgCCGCGu -3'
miRNA:   3'- ggGUGUCGGCGCUCucGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 50416 0.74 0.275767
Target:  5'- cCCCGC-GUCGCG-GAGCCGCUCgugcaGCGu -3'
miRNA:   3'- -GGGUGuCGGCGCuCUCGGCGAGg----UGC- -5'
23813 3' -60.9 NC_005261.1 + 100930 0.74 0.275767
Target:  5'- gCCUGCAGCCGCuGcAGGcCCGCgUCCACGg -3'
miRNA:   3'- -GGGUGUCGGCG-C-UCUcGGCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 103255 0.74 0.269539
Target:  5'- gCCCGCGuCCGCGcacAGCCGCUCCAgCGc -3'
miRNA:   3'- -GGGUGUcGGCGCuc-UCGGCGAGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 105154 0.74 0.263426
Target:  5'- cCUCGCGGCU-CGAGGGCgGCgUCCACGg -3'
miRNA:   3'- -GGGUGUCGGcGCUCUCGgCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33693 0.75 0.234537
Target:  5'- cCCCGgGGUCGCGcGGGGcCCGCUgCACGa -3'
miRNA:   3'- -GGGUgUCGGCGC-UCUC-GGCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29901 0.75 0.229089
Target:  5'- gCCCGCGGCagCGCGcGAGCgGCUgCGCGa -3'
miRNA:   3'- -GGGUGUCG--GCGCuCUCGgCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 68292 0.75 0.22855
Target:  5'- gCCC-CGGCCGCGGGcgcggaccucugcGGCCGCUUCgACGu -3'
miRNA:   3'- -GGGuGUCGGCGCUC-------------UCGGCGAGG-UGC- -5'
23813 3' -60.9 NC_005261.1 + 102956 0.75 0.223748
Target:  5'- gCgGCGGCCGCGGGcGCCGCgggcUCCGCc -3'
miRNA:   3'- gGgUGUCGGCGCUCuCGGCG----AGGUGc -5'
23813 3' -60.9 NC_005261.1 + 14761 0.76 0.218513
Target:  5'- gCCGC-GCCGCGAcagggGGGCCGCcCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGCU-----CUCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 99467 0.76 0.217995
Target:  5'- aCCCGCGGCgGCGcuGGCCGCUgcggccagcgccgCCGCGu -3'
miRNA:   3'- -GGGUGUCGgCGCucUCGGCGA-------------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 93829 0.76 0.217995
Target:  5'- gCCGCAGCCGcCGGGcggcGCCGCcgagcagUCCACGa -3'
miRNA:   3'- gGGUGUCGGC-GCUCu---CGGCG-------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 42167 0.76 0.213383
Target:  5'- gCCggaaGCgAGCCGUGGacgcagggcgcGAGCCGCUCCACGg -3'
miRNA:   3'- -GGg---UG-UCGGCGCU-----------CUCGGCGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.