miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 14761 0.76 0.218513
Target:  5'- gCCGC-GCCGCGAcagggGGGCCGCcCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGCU-----CUCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 102956 0.75 0.223748
Target:  5'- gCgGCGGCCGCGGGcGCCGCgggcUCCGCc -3'
miRNA:   3'- gGgUGUCGGCGCUCuCGGCG----AGGUGc -5'
23813 3' -60.9 NC_005261.1 + 29242 0.74 0.288565
Target:  5'- gCCGCGGCgccgCGCGAcGGGCCGCcgCCGCu -3'
miRNA:   3'- gGGUGUCG----GCGCU-CUCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 59062 0.74 0.288565
Target:  5'- gCgCGCGGCCGCgGAGAGCgCGCgcgggugcgCCGCGc -3'
miRNA:   3'- -GgGUGUCGGCG-CUCUCG-GCGa--------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 44782 0.73 0.295138
Target:  5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 44812 0.73 0.295138
Target:  5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 20109 0.73 0.295138
Target:  5'- uUCCGCGGCaaggcgCGCGGGcccgcAGCgGCUCCGCGa -3'
miRNA:   3'- -GGGUGUCG------GCGCUC-----UCGgCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 98046 0.73 0.295138
Target:  5'- aCUgGCGGCCGCGGGcGGCgGgaCCGCGg -3'
miRNA:   3'- -GGgUGUCGGCGCUC-UCGgCgaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 45936 0.73 0.301826
Target:  5'- cCCCGCcGCgCGCGAGGGCCGC-CaggGCGc -3'
miRNA:   3'- -GGGUGuCG-GCGCUCUCGGCGaGg--UGC- -5'
23813 3' -60.9 NC_005261.1 + 84999 0.73 0.301826
Target:  5'- aCCCagugcaugACGGCCGCGGGGucgcgcggccGCCGCgccccggCCACGa -3'
miRNA:   3'- -GGG--------UGUCGGCGCUCU----------CGGCGa------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 44285 0.74 0.287914
Target:  5'- gCCCGCcGCCaGCGgcgggccAGGGCCGCUgcCCGCGg -3'
miRNA:   3'- -GGGUGuCGG-CGC-------UCUCGGCGA--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 106616 0.74 0.282108
Target:  5'- uCCCAgAcGCCGCG-GAGCCGCgCgACGa -3'
miRNA:   3'- -GGGUgU-CGGCGCuCUCGGCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 68292 0.75 0.22855
Target:  5'- gCCC-CGGCCGCGGGcgcggaccucugcGGCCGCUUCgACGu -3'
miRNA:   3'- -GGGuGUCGGCGCUC-------------UCGGCGAGG-UGC- -5'
23813 3' -60.9 NC_005261.1 + 29901 0.75 0.229089
Target:  5'- gCCCGCGGCagCGCGcGAGCgGCUgCGCGa -3'
miRNA:   3'- -GGGUGUCG--GCGCuCUCGgCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33693 0.75 0.234537
Target:  5'- cCCCGgGGUCGCGcGGGGcCCGCUgCACGa -3'
miRNA:   3'- -GGGUgUCGGCGC-UCUC-GGCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 105154 0.74 0.263426
Target:  5'- cCUCGCGGCU-CGAGGGCgGCgUCCACGg -3'
miRNA:   3'- -GGGUGUCGGcGCUCUCGgCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 103255 0.74 0.269539
Target:  5'- gCCCGCGuCCGCGcacAGCCGCUCCAgCGc -3'
miRNA:   3'- -GGGUGUcGGCGCuc-UCGGCGAGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 100930 0.74 0.275767
Target:  5'- gCCUGCAGCCGCuGcAGGcCCGCgUCCACGg -3'
miRNA:   3'- -GGGUGUCGGCG-C-UCUcGGCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 50416 0.74 0.275767
Target:  5'- cCCCGC-GUCGCG-GAGCCGCUCgugcaGCGu -3'
miRNA:   3'- -GGGUGuCGGCGCuCUCGGCGAGg----UGC- -5'
23813 3' -60.9 NC_005261.1 + 4290 0.74 0.282108
Target:  5'- -aCACGGCCGCGGGccCCGCggccgCCGCGu -3'
miRNA:   3'- ggGUGUCGGCGCUCucGGCGa----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.