miRNA display CGI


Results 81 - 100 of 381 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 108187 0.73 0.315552
Target:  5'- gCCGCGGCuccgggCGCGAGAGCUGCgccagCACGg -3'
miRNA:   3'- gGGUGUCG------GCGCUCUCGGCGag---GUGC- -5'
23813 3' -60.9 NC_005261.1 + 103369 0.73 0.315552
Target:  5'- cCCCAgcuCGGCCGCGcgccGCCGCgCCGCGg -3'
miRNA:   3'- -GGGU---GUCGGCGCucu-CGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 49517 0.73 0.322589
Target:  5'- cUCCGaaaaGGUCGCGGGccAGCCGCcgUCCGCGg -3'
miRNA:   3'- -GGGUg---UCGGCGCUC--UCGGCG--AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 118058 0.73 0.322589
Target:  5'- gCUgGCGGCCGCGGcagcGGCCGCagCCGCGc -3'
miRNA:   3'- -GGgUGUCGGCGCUc---UCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 33391 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 33427 0.73 0.322589
Target:  5'- gCCGCAGCCGCcgccgcAGCCGCcgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcuc---UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 102791 0.73 0.322589
Target:  5'- gCCC-CGGCCGCGAGcgcggcgcccAGCCGC-CgCGCGc -3'
miRNA:   3'- -GGGuGUCGGCGCUC----------UCGGCGaG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 84999 0.73 0.301826
Target:  5'- aCCCagugcaugACGGCCGCGGGGucgcgcggccGCCGCgccccggCCACGa -3'
miRNA:   3'- -GGG--------UGUCGGCGCUCU----------CGGCGa------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 45936 0.73 0.301826
Target:  5'- cCCCGCcGCgCGCGAGGGCCGC-CaggGCGc -3'
miRNA:   3'- -GGGUGuCG-GCGCUCUCGGCGaGg--UGC- -5'
23813 3' -60.9 NC_005261.1 + 98046 0.73 0.295138
Target:  5'- aCUgGCGGCCGCGGGcGGCgGgaCCGCGg -3'
miRNA:   3'- -GGgUGUCGGCGCUC-UCGgCgaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 100930 0.74 0.275767
Target:  5'- gCCUGCAGCCGCuGcAGGcCCGCgUCCACGg -3'
miRNA:   3'- -GGGUGUCGGCG-C-UCUcGGCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 50416 0.74 0.275767
Target:  5'- cCCCGC-GUCGCG-GAGCCGCUCgugcaGCGu -3'
miRNA:   3'- -GGGUGuCGGCGCuCUCGGCGAGg----UGC- -5'
23813 3' -60.9 NC_005261.1 + 4290 0.74 0.282108
Target:  5'- -aCACGGCCGCGGGccCCGCggccgCCGCGu -3'
miRNA:   3'- ggGUGUCGGCGCUCucGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 106616 0.74 0.282108
Target:  5'- uCCCAgAcGCCGCG-GAGCCGCgCgACGa -3'
miRNA:   3'- -GGGUgU-CGGCGCuCUCGGCGaGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 44285 0.74 0.287914
Target:  5'- gCCCGCcGCCaGCGgcgggccAGGGCCGCUgcCCGCGg -3'
miRNA:   3'- -GGGUGuCGG-CGC-------UCUCGGCGA--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 29242 0.74 0.288565
Target:  5'- gCCGCGGCgccgCGCGAcGGGCCGCcgCCGCu -3'
miRNA:   3'- gGGUGUCG----GCGCU-CUCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 59062 0.74 0.288565
Target:  5'- gCgCGCGGCCGCgGAGAGCgCGCgcgggugcgCCGCGc -3'
miRNA:   3'- -GgGUGUCGGCG-CUCUCG-GCGa--------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 44782 0.73 0.295138
Target:  5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 44812 0.73 0.295138
Target:  5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3'
miRNA:   3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 20109 0.73 0.295138
Target:  5'- uUCCGCGGCaaggcgCGCGGGcccgcAGCgGCUCCGCGa -3'
miRNA:   3'- -GGGUGUCG------GCGCUC-----UCGgCGAGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.