Results 101 - 120 of 381 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23813 | 3' | -60.9 | NC_005261.1 | + | 72774 | 0.73 | 0.329743 |
Target: 5'- aCgGCGGCCGCGcacgcguccGGGGCCGCggaCACGu -3' miRNA: 3'- gGgUGUCGGCGC---------UCUCGGCGag-GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 125281 | 0.73 | 0.329743 |
Target: 5'- gCCGCuggaagucaGGCCGCGGGcGCCggacccgcgggcGCUCCGCGg -3' miRNA: 3'- gGGUG---------UCGGCGCUCuCGG------------CGAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 99039 | 0.72 | 0.337014 |
Target: 5'- gCCCACAGCaccCGCGcGAGCUGCagCUGCGu -3' miRNA: 3'- -GGGUGUCG---GCGCuCUCGGCGa-GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 49298 | 0.72 | 0.337014 |
Target: 5'- gCCCGCGGCgGUGAGcGCCGCgcagCCcuCGa -3' miRNA: 3'- -GGGUGUCGgCGCUCuCGGCGa---GGu-GC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 67430 | 0.72 | 0.343657 |
Target: 5'- gCCCGCGGCCaGCGcccaaagGGcAGCCGgUCCGCc -3' miRNA: 3'- -GGGUGUCGG-CGC-------UC-UCGGCgAGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 118058 | 0.73 | 0.322589 |
Target: 5'- gCUgGCGGCCGCGGcagcGGCCGCagCCGCGc -3' miRNA: 3'- -GGgUGUCGGCGCUc---UCGGCGa-GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 49517 | 0.73 | 0.322589 |
Target: 5'- cUCCGaaaaGGUCGCGGGccAGCCGCcgUCCGCGg -3' miRNA: 3'- -GGGUg---UCGGCGCUC--UCGGCG--AGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 29242 | 0.74 | 0.288565 |
Target: 5'- gCCGCGGCgccgCGCGAcGGGCCGCcgCCGCu -3' miRNA: 3'- gGGUGUCG----GCGCU-CUCGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 59062 | 0.74 | 0.288565 |
Target: 5'- gCgCGCGGCCGCgGAGAGCgCGCgcgggugcgCCGCGc -3' miRNA: 3'- -GgGUGUCGGCG-CUCUCG-GCGa--------GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 44782 | 0.73 | 0.295138 |
Target: 5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3' miRNA: 3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 44812 | 0.73 | 0.295138 |
Target: 5'- gCCGCAGCCGC-AGccgcAGCCGCagCCGCa -3' miRNA: 3'- gGGUGUCGGCGcUC----UCGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 20109 | 0.73 | 0.295138 |
Target: 5'- uUCCGCGGCaaggcgCGCGGGcccgcAGCgGCUCCGCGa -3' miRNA: 3'- -GGGUGUCG------GCGCUC-----UCGgCGAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 98046 | 0.73 | 0.295138 |
Target: 5'- aCUgGCGGCCGCGGGcGGCgGgaCCGCGg -3' miRNA: 3'- -GGgUGUCGGCGCUC-UCGgCgaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 45936 | 0.73 | 0.301826 |
Target: 5'- cCCCGCcGCgCGCGAGGGCCGC-CaggGCGc -3' miRNA: 3'- -GGGUGuCG-GCGCUCUCGGCGaGg--UGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 84999 | 0.73 | 0.301826 |
Target: 5'- aCCCagugcaugACGGCCGCGGGGucgcgcggccGCCGCgccccggCCACGa -3' miRNA: 3'- -GGG--------UGUCGGCGCUCU----------CGGCGa------GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 28760 | 0.73 | 0.308631 |
Target: 5'- gCCGCGGCCGgGGGcgccugGGCCGCggCGCGg -3' miRNA: 3'- gGGUGUCGGCgCUC------UCGGCGagGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 104116 | 0.73 | 0.308631 |
Target: 5'- aCCGCAGCCGCGcGGuucGCCGCgagcucggCCGCc -3' miRNA: 3'- gGGUGUCGGCGC-UCu--CGGCGa-------GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 105348 | 0.73 | 0.315552 |
Target: 5'- gCCACGGCCGUGAGgcaGGCCGUgacaggCgGCGc -3' miRNA: 3'- gGGUGUCGGCGCUC---UCGGCGa-----GgUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 108187 | 0.73 | 0.315552 |
Target: 5'- gCCGCGGCuccgggCGCGAGAGCUGCgccagCACGg -3' miRNA: 3'- gGGUGUCG------GCGCUCUCGGCGag---GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 103369 | 0.73 | 0.315552 |
Target: 5'- cCCCAgcuCGGCCGCGcgccGCCGCgCCGCGg -3' miRNA: 3'- -GGGU---GUCGGCGCucu-CGGCGaGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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