Results 21 - 40 of 381 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23813 | 3' | -60.9 | NC_005261.1 | + | 19037 | 0.66 | 0.71005 |
Target: 5'- --gGCAGCCG-GAGAGCCGC-CagGCa -3' miRNA: 3'- gggUGUCGGCgCUCUCGGCGaGg-UGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 35091 | 0.66 | 0.71005 |
Target: 5'- cCUCGgAGCCGCGGuGAGCgGCgagccccccagCCGCc -3' miRNA: 3'- -GGGUgUCGGCGCU-CUCGgCGa----------GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 102050 | 0.66 | 0.709084 |
Target: 5'- cCCCGucgcgaugugcauCAGCCGCGucAGCUGgC-CCACGu -3' miRNA: 3'- -GGGU-------------GUCGGCGCucUCGGC-GaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 10107 | 0.66 | 0.707151 |
Target: 5'- cCCgGCAGCgGCGGcGAcagccaccaccaccGCCGCcaugagCCACGg -3' miRNA: 3'- -GGgUGUCGgCGCU-CU--------------CGGCGa-----GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 136885 | 0.66 | 0.707151 |
Target: 5'- -gCGCGGCCgaugaaguguacugGCGugguguGGGCCGCgcggCCGCGg -3' miRNA: 3'- ggGUGUCGG--------------CGCu-----CUCGGCGa---GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 121386 | 0.66 | 0.704246 |
Target: 5'- cCCCGCGGCgGCGGcgccugcccgagugcGAcggcuGCCGCcgCCGCu -3' miRNA: 3'- -GGGUGUCGgCGCU---------------CU-----CGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 2505 | 0.66 | 0.704246 |
Target: 5'- gUCCGCgAGCCGCGccgcgaccucggggcGGcaguaGGCCGCcagcgCCGCGg -3' miRNA: 3'- -GGGUG-UCGGCGC---------------UC-----UCGGCGa----GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 124092 | 0.66 | 0.700365 |
Target: 5'- gCCCGCguAGCgCGCGcacAGGGCCgGCaCCGCa -3' miRNA: 3'- -GGGUG--UCG-GCGC---UCUCGG-CGaGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 121861 | 0.66 | 0.700365 |
Target: 5'- gCCCGCGGCuccCGCc-GAGCCGCaUCgACu -3' miRNA: 3'- -GGGUGUCG---GCGcuCUCGGCG-AGgUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 31530 | 0.66 | 0.700365 |
Target: 5'- aCCgGCuGCUGCuGAGcGCCGaCUCgCACGc -3' miRNA: 3'- -GGgUGuCGGCG-CUCuCGGC-GAG-GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 13662 | 0.66 | 0.700365 |
Target: 5'- gCCGCcGCCGCGGGGGgggCGCggggCgCGCGg -3' miRNA: 3'- gGGUGuCGGCGCUCUCg--GCGa---G-GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 67634 | 0.66 | 0.700365 |
Target: 5'- aCCACGuacGCCGaGAacgcGGGCCGCccgUCCGCGc -3' miRNA: 3'- gGGUGU---CGGCgCU----CUCGGCG---AGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 107852 | 0.66 | 0.700365 |
Target: 5'- gCCGCcGCCGCccucgccGGCCGC-CCGCGc -3' miRNA: 3'- gGGUGuCGGCGcuc----UCGGCGaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 39374 | 0.66 | 0.700365 |
Target: 5'- aUCgGCGGCCgGgGAGGGCgGC-CCugGc -3' miRNA: 3'- -GGgUGUCGG-CgCUCUCGgCGaGGugC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 57382 | 0.66 | 0.700365 |
Target: 5'- gCCCgccaGCAGCuCG-GGGAGCgCGCccgugaUCCGCGg -3' miRNA: 3'- -GGG----UGUCG-GCgCUCUCG-GCG------AGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 29577 | 0.66 | 0.700365 |
Target: 5'- gCUGCAGCgGCGcgugcAGGGCUGCcggggCCACa -3' miRNA: 3'- gGGUGUCGgCGC-----UCUCGGCGa----GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 37727 | 0.66 | 0.697449 |
Target: 5'- gCCCGCcggAGCCccccgucgccccccGCGGGcGCCGCgCCGCc -3' miRNA: 3'- -GGGUG---UCGG--------------CGCUCuCGGCGaGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 37920 | 0.66 | 0.697449 |
Target: 5'- gCCACcGCUGCGcgaguacgagcgccGGAGCCGCgUCgaGCGg -3' miRNA: 3'- gGGUGuCGGCGC--------------UCUCGGCG-AGg-UGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 65373 | 0.66 | 0.694529 |
Target: 5'- gCCCGCAcgcccggcauuaccuGCgGCGGGuugggcGGCCccggcaGCUCCACGu -3' miRNA: 3'- -GGGUGU---------------CGgCGCUC------UCGG------CGAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 54362 | 0.66 | 0.690628 |
Target: 5'- uCCCAgGuCCGCGGGcAGCgGCUcggggcgcCCGCGa -3' miRNA: 3'- -GGGUgUcGGCGCUC-UCGgCGA--------GGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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