Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 43786 | 0.66 | 0.743965 |
Target: 5'- cGCGCGGaGGGC--GCCGCGGgUGaGGGg -3' miRNA: 3'- aUGCGCC-CCUGcaUGGCGCUgAC-CUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 98104 | 0.66 | 0.734301 |
Target: 5'- gGCGCGGcGGGCGg--CGaGGCUGGGGa -3' miRNA: 3'- aUGCGCC-CCUGCaugGCgCUGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 100166 | 0.66 | 0.734301 |
Target: 5'- aGCGCGcccaGGGACGcaacGCCGUGGCggcgGGGc -3' miRNA: 3'- aUGCGC----CCCUGCa---UGGCGCUGa---CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 110813 | 0.66 | 0.734301 |
Target: 5'- gAgGCGGGGGCGgacgggGCCGCGGac-GAGu -3' miRNA: 3'- aUgCGCCCCUGCa-----UGGCGCUgacCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 127747 | 0.66 | 0.734301 |
Target: 5'- gGCgGCGGGaGCGgGCCGCGGC-GGGc -3' miRNA: 3'- aUG-CGCCCcUGCaUGGCGCUGaCCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 74708 | 0.66 | 0.734301 |
Target: 5'- cGCGCGGGcGCGgaaccggGCCGCGGCa---- -3' miRNA: 3'- aUGCGCCCcUGCa------UGGCGCUGaccuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 30788 | 0.66 | 0.724549 |
Target: 5'- cGCgGCGGuGGAgGUGCUGgGGCcGGAGg -3' miRNA: 3'- aUG-CGCC-CCUgCAUGGCgCUGaCCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 32228 | 0.66 | 0.724549 |
Target: 5'- -cCGCGGcGGugGccuucugcgcgGCCGCGcuGCUGGAGc -3' miRNA: 3'- auGCGCC-CCugCa----------UGGCGC--UGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 32390 | 0.66 | 0.72357 |
Target: 5'- gGCGCGGcGGcgucccggagcGCGUGCCgccgccgGCGACgGGAGc -3' miRNA: 3'- aUGCGCC-CC-----------UGCAUGG-------CGCUGaCCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 31604 | 0.66 | 0.72357 |
Target: 5'- gGCGCGcaGGGCGUGCugcugcuCGCGACgcgGGAc -3' miRNA: 3'- aUGCGCc-CCUGCAUG-------GCGCUGa--CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 129676 | 0.66 | 0.71472 |
Target: 5'- gAC-CGGGGGCGU--CGCGACUcGGGc -3' miRNA: 3'- aUGcGCCCCUGCAugGCGCUGA-CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 107127 | 0.66 | 0.71472 |
Target: 5'- cGCGCcGGcGACGgcgcccacgGCCGCGGCcaUGGAGg -3' miRNA: 3'- aUGCGcCC-CUGCa--------UGGCGCUG--ACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 87890 | 0.66 | 0.71472 |
Target: 5'- gGCGCGGagagggcgggccGGGCGUACCGUGugUcugccgccacccGGGg -3' miRNA: 3'- aUGCGCC------------CCUGCAUGGCGCugA------------CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 34931 | 0.66 | 0.705814 |
Target: 5'- cACGCGGgGGGCGgccggcgcgacccggGCCcgGCGGcCUGGAGa -3' miRNA: 3'- aUGCGCC-CCUGCa--------------UGG--CGCU-GACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 110993 | 0.66 | 0.704821 |
Target: 5'- gUGCGCcuGGGGACGcUGCCGCacGACUcgccgcGGGu -3' miRNA: 3'- -AUGCG--CCCCUGC-AUGGCG--CUGA------CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 71965 | 0.66 | 0.704821 |
Target: 5'- gGCGCGGGGcGCGgaGCgCGCGGCaGGu- -3' miRNA: 3'- aUGCGCCCC-UGCa-UG-GCGCUGaCCuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 8375 | 0.66 | 0.704821 |
Target: 5'- -uUGUGGGGAgGgcccccccaaGCCGgGGCUGGGAu -3' miRNA: 3'- auGCGCCCCUgCa---------UGGCgCUGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 68958 | 0.66 | 0.703828 |
Target: 5'- cGCGCGGGGACcugGUgcgcgccACCGCGGCccuuuucGGGc -3' miRNA: 3'- aUGCGCCCCUG---CA-------UGGCGCUGa------CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 95175 | 0.67 | 0.684852 |
Target: 5'- gGCGagGGGGACGUGCCccaGCc-CUGGGAc -3' miRNA: 3'- aUGCg-CCCCUGCAUGG---CGcuGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 118215 | 0.67 | 0.684852 |
Target: 5'- cUGCGCGGGG-CGcugacgGCCGCGGCcgcGGc- -3' miRNA: 3'- -AUGCGCCCCuGCa-----UGGCGCUGa--CCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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