miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 43786 0.66 0.743965
Target:  5'- cGCGCGGaGGGC--GCCGCGGgUGaGGGg -3'
miRNA:   3'- aUGCGCC-CCUGcaUGGCGCUgAC-CUU- -5'
23813 5' -59.4 NC_005261.1 + 127747 0.66 0.734301
Target:  5'- gGCgGCGGGaGCGgGCCGCGGC-GGGc -3'
miRNA:   3'- aUG-CGCCCcUGCaUGGCGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 74708 0.66 0.734301
Target:  5'- cGCGCGGGcGCGgaaccggGCCGCGGCa---- -3'
miRNA:   3'- aUGCGCCCcUGCa------UGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 110813 0.66 0.734301
Target:  5'- gAgGCGGGGGCGgacgggGCCGCGGac-GAGu -3'
miRNA:   3'- aUgCGCCCCUGCa-----UGGCGCUgacCUU- -5'
23813 5' -59.4 NC_005261.1 + 100166 0.66 0.734301
Target:  5'- aGCGCGcccaGGGACGcaacGCCGUGGCggcgGGGc -3'
miRNA:   3'- aUGCGC----CCCUGCa---UGGCGCUGa---CCUu -5'
23813 5' -59.4 NC_005261.1 + 98104 0.66 0.734301
Target:  5'- gGCGCGGcGGGCGg--CGaGGCUGGGGa -3'
miRNA:   3'- aUGCGCC-CCUGCaugGCgCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 30788 0.66 0.724549
Target:  5'- cGCgGCGGuGGAgGUGCUGgGGCcGGAGg -3'
miRNA:   3'- aUG-CGCC-CCUgCAUGGCgCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 32228 0.66 0.724549
Target:  5'- -cCGCGGcGGugGccuucugcgcgGCCGCGcuGCUGGAGc -3'
miRNA:   3'- auGCGCC-CCugCa----------UGGCGC--UGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 32390 0.66 0.72357
Target:  5'- gGCGCGGcGGcgucccggagcGCGUGCCgccgccgGCGACgGGAGc -3'
miRNA:   3'- aUGCGCC-CC-----------UGCAUGG-------CGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 31604 0.66 0.72357
Target:  5'- gGCGCGcaGGGCGUGCugcugcuCGCGACgcgGGAc -3'
miRNA:   3'- aUGCGCc-CCUGCAUG-------GCGCUGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 107127 0.66 0.71472
Target:  5'- cGCGCcGGcGACGgcgcccacgGCCGCGGCcaUGGAGg -3'
miRNA:   3'- aUGCGcCC-CUGCa--------UGGCGCUG--ACCUU- -5'
23813 5' -59.4 NC_005261.1 + 87890 0.66 0.71472
Target:  5'- gGCGCGGagagggcgggccGGGCGUACCGUGugUcugccgccacccGGGg -3'
miRNA:   3'- aUGCGCC------------CCUGCAUGGCGCugA------------CCUu -5'
23813 5' -59.4 NC_005261.1 + 129676 0.66 0.71472
Target:  5'- gAC-CGGGGGCGU--CGCGACUcGGGc -3'
miRNA:   3'- aUGcGCCCCUGCAugGCGCUGA-CCUu -5'
23813 5' -59.4 NC_005261.1 + 34931 0.66 0.705814
Target:  5'- cACGCGGgGGGCGgccggcgcgacccggGCCcgGCGGcCUGGAGa -3'
miRNA:   3'- aUGCGCC-CCUGCa--------------UGG--CGCU-GACCUU- -5'
23813 5' -59.4 NC_005261.1 + 110993 0.66 0.704821
Target:  5'- gUGCGCcuGGGGACGcUGCCGCacGACUcgccgcGGGu -3'
miRNA:   3'- -AUGCG--CCCCUGC-AUGGCG--CUGA------CCUu -5'
23813 5' -59.4 NC_005261.1 + 71965 0.66 0.704821
Target:  5'- gGCGCGGGGcGCGgaGCgCGCGGCaGGu- -3'
miRNA:   3'- aUGCGCCCC-UGCa-UG-GCGCUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 8375 0.66 0.704821
Target:  5'- -uUGUGGGGAgGgcccccccaaGCCGgGGCUGGGAu -3'
miRNA:   3'- auGCGCCCCUgCa---------UGGCgCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 68958 0.66 0.703828
Target:  5'- cGCGCGGGGACcugGUgcgcgccACCGCGGCccuuuucGGGc -3'
miRNA:   3'- aUGCGCCCCUG---CA-------UGGCGCUGa------CCUu -5'
23813 5' -59.4 NC_005261.1 + 95175 0.67 0.684852
Target:  5'- gGCGagGGGGACGUGCCccaGCc-CUGGGAc -3'
miRNA:   3'- aUGCg-CCCCUGCAUGG---CGcuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 118215 0.67 0.684852
Target:  5'- cUGCGCGGGG-CGcugacgGCCGCGGCcgcGGc- -3'
miRNA:   3'- -AUGCGCCCCuGCa-----UGGCGCUGa--CCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.