miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 68852 0.77 0.188582
Target:  5'- -cCGCGGGGACGcccucUGCCGCGGCUGu-- -3'
miRNA:   3'- auGCGCCCCUGC-----AUGGCGCUGACcuu -5'
23813 5' -59.4 NC_005261.1 + 68087 0.75 0.264653
Target:  5'- -cCGCGGGGGCGgggagGCCGUgaaguucgGGCUGGAGc -3'
miRNA:   3'- auGCGCCCCUGCa----UGGCG--------CUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 88146 0.74 0.304216
Target:  5'- cGCGCGGGGGCGccccgGCCGCGcaGCcGGGc -3'
miRNA:   3'- aUGCGCCCCUGCa----UGGCGC--UGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 132641 0.73 0.348167
Target:  5'- gACGCGGGcgcGGCGgcccuagcgGCCGCGugUGGGu -3'
miRNA:   3'- aUGCGCCC---CUGCa--------UGGCGCugACCUu -5'
23813 5' -59.4 NC_005261.1 + 20287 0.73 0.351253
Target:  5'- -uCGCGGGGGCGcGCUugcggcagaaaaacgGCGACUGGGc -3'
miRNA:   3'- auGCGCCCCUGCaUGG---------------CGCUGACCUu -5'
23813 5' -59.4 NC_005261.1 + 98005 0.73 0.355919
Target:  5'- gGCgGCGGGGGCGcugGCgGCGagGCUGGAGa -3'
miRNA:   3'- aUG-CGCCCCUGCa--UGgCGC--UGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 126958 0.72 0.371784
Target:  5'- gGCGCGGGGGCGgcagcgcgaACCGCG-CgggGGAc -3'
miRNA:   3'- aUGCGCCCCUGCa--------UGGCGCuGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 110597 0.72 0.379895
Target:  5'- cUGCGCGuuccuGGACGUggacgccgaGCUGCGGCUGGAGc -3'
miRNA:   3'- -AUGCGCc----CCUGCA---------UGGCGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 445 0.72 0.396468
Target:  5'- cGgGaCGGGGACGgggGCCGCGACggccggcgGGAu -3'
miRNA:   3'- aUgC-GCCCCUGCa--UGGCGCUGa-------CCUu -5'
23813 5' -59.4 NC_005261.1 + 138116 0.72 0.396468
Target:  5'- cGgGaCGGGGACGgggGCCGCGACggccggcgGGAu -3'
miRNA:   3'- aUgC-GCCCCUGCa--UGGCGCUGa-------CCUu -5'
23813 5' -59.4 NC_005261.1 + 97099 0.71 0.430976
Target:  5'- gGC-CGGGGGCGccagccggGCCGCGGCcGGAGg -3'
miRNA:   3'- aUGcGCCCCUGCa-------UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 132096 0.71 0.457065
Target:  5'- -cCGCGGaGGGCG-GCCGCGACgcgcucgUGGAGc -3'
miRNA:   3'- auGCGCC-CCUGCaUGGCGCUG-------ACCUU- -5'
23813 5' -59.4 NC_005261.1 + 43410 0.71 0.45798
Target:  5'- gGCGcCGGGGGCGgccuccGCCGCcGGCgGGGAg -3'
miRNA:   3'- aUGC-GCCCCUGCa-----UGGCG-CUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 22746 0.7 0.476476
Target:  5'- gGCGCGGGGcgGCGgcgGCCcacGCGuCUGGGGg -3'
miRNA:   3'- aUGCGCCCC--UGCa--UGG---CGCuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 36578 0.7 0.476476
Target:  5'- --aGCGGGGGCccGCCGCGGCcaccgGGGGg -3'
miRNA:   3'- augCGCCCCUGcaUGGCGCUGa----CCUU- -5'
23813 5' -59.4 NC_005261.1 + 75162 0.7 0.504892
Target:  5'- cGCGCGGcauGGAC-UACCGCGAC-GGGc -3'
miRNA:   3'- aUGCGCC---CCUGcAUGGCGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 113540 0.69 0.524235
Target:  5'- gGCuCGGGGcCGUGCgCGCG-CUGGAc -3'
miRNA:   3'- aUGcGCCCCuGCAUG-GCGCuGACCUu -5'
23813 5' -59.4 NC_005261.1 + 96454 0.69 0.524235
Target:  5'- aGCgGCGGGGuacagaaggccGCGcuCCGCGGCUGGGGg -3'
miRNA:   3'- aUG-CGCCCC-----------UGCauGGCGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 107694 0.69 0.540895
Target:  5'- cGCgGCGGGGGCGccgccgaacgucgcUGCCGCGGCaGGc- -3'
miRNA:   3'- aUG-CGCCCCUGC--------------AUGGCGCUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 23629 0.69 0.543854
Target:  5'- gGCGCGGcGGGgGUcggGCGGCUGGAAg -3'
miRNA:   3'- aUGCGCC-CCUgCAuggCGCUGACCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.