miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 120968 0.69 0.553754
Target:  5'- -cCGCGGGGcGCGUGCCGCcGCaGGc- -3'
miRNA:   3'- auGCGCCCC-UGCAUGGCGcUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 28786 0.69 0.553754
Target:  5'- gGCGCGGGcgcuCGcgGCCGCGGC-GGAGg -3'
miRNA:   3'- aUGCGCCCcu--GCa-UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 29464 0.69 0.553754
Target:  5'- gACGCGGGGAagcaGUA-CGCGGCgcuggUGGAc -3'
miRNA:   3'- aUGCGCCCCUg---CAUgGCGCUG-----ACCUu -5'
23813 5' -59.4 NC_005261.1 + 98350 0.69 0.563707
Target:  5'- gACGCGGGGGCGggggugGgCGCGGgcuCUGGc- -3'
miRNA:   3'- aUGCGCCCCUGCa-----UgGCGCU---GACCuu -5'
23813 5' -59.4 NC_005261.1 + 8842 0.68 0.583748
Target:  5'- gGgGCGGGGACagGCCGUGGgaGGGg -3'
miRNA:   3'- aUgCGCCCCUGcaUGGCGCUgaCCUu -5'
23813 5' -59.4 NC_005261.1 + 47618 0.68 0.583748
Target:  5'- -cUGCGGGGGCG-GCCGCGGCc---- -3'
miRNA:   3'- auGCGCCCCUGCaUGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 97179 0.68 0.593823
Target:  5'- -uCGCGGGcGcCGgccggGCCGCGGCcGGAAg -3'
miRNA:   3'- auGCGCCC-CuGCa----UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 71811 0.68 0.611009
Target:  5'- -cCGUGGGGACGUaggagacgggccacACCGCGGCg---- -3'
miRNA:   3'- auGCGCCCCUGCA--------------UGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 118850 0.68 0.624184
Target:  5'- gGCGCGGaGGGCGgcgcgcCCGCGGCccUGGc- -3'
miRNA:   3'- aUGCGCC-CCUGCau----GGCGCUG--ACCuu -5'
23813 5' -59.4 NC_005261.1 + 57892 0.68 0.634326
Target:  5'- gGCaCGGGGACGgccACCGCGuCgcGGAAg -3'
miRNA:   3'- aUGcGCCCCUGCa--UGGCGCuGa-CCUU- -5'
23813 5' -59.4 NC_005261.1 + 17172 0.67 0.643453
Target:  5'- gGCGCGGGcGugGgcagcccUGCCGCGGCgGcGAGc -3'
miRNA:   3'- aUGCGCCC-CugC-------AUGGCGCUGaC-CUU- -5'
23813 5' -59.4 NC_005261.1 + 2646 0.67 0.644467
Target:  5'- cACGCGGGcgggcagcGGCGgcucccGCCGCG-CUGGGGa -3'
miRNA:   3'- aUGCGCCC--------CUGCa-----UGGCGCuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 128508 0.67 0.654598
Target:  5'- gACGCGGcGGCGgaggcaGCCuccugGCGGCUGGAGu -3'
miRNA:   3'- aUGCGCCcCUGCa-----UGG-----CGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 21196 0.67 0.664711
Target:  5'- aGCGCGGccgcGGACGcuggccccgGCCGCGACggcGGGc -3'
miRNA:   3'- aUGCGCC----CCUGCa--------UGGCGCUGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 98054 0.67 0.668749
Target:  5'- -cCGCGGGcGGCGggACCGCGGgcggcggguguguccUUGGAGa -3'
miRNA:   3'- auGCGCCC-CUGCa-UGGCGCU---------------GACCUU- -5'
23813 5' -59.4 NC_005261.1 + 90204 0.67 0.674798
Target:  5'- aGCGCGGGGGCGgcggagcGCCcucgcGCGGC-GGGc -3'
miRNA:   3'- aUGCGCCCCUGCa------UGG-----CGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 134292 0.67 0.674798
Target:  5'- gGCGUGGGuccACGUcgccgccuucGCCGCG-CUGGAGc -3'
miRNA:   3'- aUGCGCCCc--UGCA----------UGGCGCuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 44888 0.67 0.674798
Target:  5'- -cCGCGGGGAUG-GCCGgGGCguacacGGAc -3'
miRNA:   3'- auGCGCCCCUGCaUGGCgCUGa-----CCUu -5'
23813 5' -59.4 NC_005261.1 + 42632 0.67 0.684852
Target:  5'- --aGCGGGGACucggccGCCGCGGCcgcgcGGAAc -3'
miRNA:   3'- augCGCCCCUGca----UGGCGCUGa----CCUU- -5'
23813 5' -59.4 NC_005261.1 + 74918 0.67 0.684852
Target:  5'- cGCGCGGGGgagggcgaggACGgggACUGCGGCgcGGGc -3'
miRNA:   3'- aUGCGCCCC----------UGCa--UGGCGCUGa-CCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.