Results 21 - 40 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 118031 | 0.67 | 0.684852 |
Target: 5'- cACGCGGGGcccgGCCGCGACg---- -3' miRNA: 3'- aUGCGCCCCugcaUGGCGCUGaccuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 111600 | 0.67 | 0.684852 |
Target: 5'- cACGCGGaGugGg--CGCGGCUGGGc -3' miRNA: 3'- aUGCGCCcCugCaugGCGCUGACCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 98395 | 0.67 | 0.684852 |
Target: 5'- gGCGUGGGGGCGgg-CGCGGacuCUGGu- -3' miRNA: 3'- aUGCGCCCCUGCaugGCGCU---GACCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 42632 | 0.67 | 0.684852 |
Target: 5'- --aGCGGGGACucggccGCCGCGGCcgcgcGGAAc -3' miRNA: 3'- augCGCCCCUGca----UGGCGCUGa----CCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 12550 | 0.67 | 0.684852 |
Target: 5'- aUACGCGGGGGCc--CCGCG-CcGGGc -3' miRNA: 3'- -AUGCGCCCCUGcauGGCGCuGaCCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 74918 | 0.67 | 0.684852 |
Target: 5'- cGCGCGGGGgagggcgaggACGgggACUGCGGCgcGGGc -3' miRNA: 3'- aUGCGCCCC----------UGCa--UGGCGCUGa-CCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 90204 | 0.67 | 0.674798 |
Target: 5'- aGCGCGGGGGCGgcggagcGCCcucgcGCGGC-GGGc -3' miRNA: 3'- aUGCGCCCCUGCa------UGG-----CGCUGaCCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 134292 | 0.67 | 0.674798 |
Target: 5'- gGCGUGGGuccACGUcgccgccuucGCCGCG-CUGGAGc -3' miRNA: 3'- aUGCGCCCc--UGCA----------UGGCGCuGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 44888 | 0.67 | 0.674798 |
Target: 5'- -cCGCGGGGAUG-GCCGgGGCguacacGGAc -3' miRNA: 3'- auGCGCCCCUGCaUGGCgCUGa-----CCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 98054 | 0.67 | 0.668749 |
Target: 5'- -cCGCGGGcGGCGggACCGCGGgcggcggguguguccUUGGAGa -3' miRNA: 3'- auGCGCCC-CUGCa-UGGCGCU---------------GACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 21196 | 0.67 | 0.664711 |
Target: 5'- aGCGCGGccgcGGACGcuggccccgGCCGCGACggcGGGc -3' miRNA: 3'- aUGCGCC----CCUGCa--------UGGCGCUGa--CCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 128508 | 0.67 | 0.654598 |
Target: 5'- gACGCGGcGGCGgaggcaGCCuccugGCGGCUGGAGu -3' miRNA: 3'- aUGCGCCcCUGCa-----UGG-----CGCUGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 2646 | 0.67 | 0.644467 |
Target: 5'- cACGCGGGcgggcagcGGCGgcucccGCCGCG-CUGGGGa -3' miRNA: 3'- aUGCGCCC--------CUGCa-----UGGCGCuGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 17172 | 0.67 | 0.643453 |
Target: 5'- gGCGCGGGcGugGgcagcccUGCCGCGGCgGcGAGc -3' miRNA: 3'- aUGCGCCC-CugC-------AUGGCGCUGaC-CUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 57892 | 0.68 | 0.634326 |
Target: 5'- gGCaCGGGGACGgccACCGCGuCgcGGAAg -3' miRNA: 3'- aUGcGCCCCUGCa--UGGCGCuGa-CCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 118850 | 0.68 | 0.624184 |
Target: 5'- gGCGCGGaGGGCGgcgcgcCCGCGGCccUGGc- -3' miRNA: 3'- aUGCGCC-CCUGCau----GGCGCUG--ACCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 71811 | 0.68 | 0.611009 |
Target: 5'- -cCGUGGGGACGUaggagacgggccacACCGCGGCg---- -3' miRNA: 3'- auGCGCCCCUGCA--------------UGGCGCUGaccuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 97179 | 0.68 | 0.593823 |
Target: 5'- -uCGCGGGcGcCGgccggGCCGCGGCcGGAAg -3' miRNA: 3'- auGCGCCC-CuGCa----UGGCGCUGaCCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 47618 | 0.68 | 0.583748 |
Target: 5'- -cUGCGGGGGCG-GCCGCGGCc---- -3' miRNA: 3'- auGCGCCCCUGCaUGGCGCUGaccuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 8842 | 0.68 | 0.583748 |
Target: 5'- gGgGCGGGGACagGCCGUGGgaGGGg -3' miRNA: 3'- aUgCGCCCCUGcaUGGCGCUgaCCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home