miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 445 0.72 0.396468
Target:  5'- cGgGaCGGGGACGgggGCCGCGACggccggcgGGAu -3'
miRNA:   3'- aUgC-GCCCCUGCa--UGGCGCUGa-------CCUu -5'
23813 5' -59.4 NC_005261.1 + 2646 0.67 0.644467
Target:  5'- cACGCGGGcgggcagcGGCGgcucccGCCGCG-CUGGGGa -3'
miRNA:   3'- aUGCGCCC--------CUGCa-----UGGCGCuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 8375 0.66 0.704821
Target:  5'- -uUGUGGGGAgGgcccccccaaGCCGgGGCUGGGAu -3'
miRNA:   3'- auGCGCCCCUgCa---------UGGCgCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 8842 0.68 0.583748
Target:  5'- gGgGCGGGGACagGCCGUGGgaGGGg -3'
miRNA:   3'- aUgCGCCCCUGcaUGGCGCUgaCCUu -5'
23813 5' -59.4 NC_005261.1 + 12550 0.67 0.684852
Target:  5'- aUACGCGGGGGCc--CCGCG-CcGGGc -3'
miRNA:   3'- -AUGCGCCCCUGcauGGCGCuGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 17172 0.67 0.643453
Target:  5'- gGCGCGGGcGugGgcagcccUGCCGCGGCgGcGAGc -3'
miRNA:   3'- aUGCGCCC-CugC-------AUGGCGCUGaC-CUU- -5'
23813 5' -59.4 NC_005261.1 + 20287 0.73 0.351253
Target:  5'- -uCGCGGGGGCGcGCUugcggcagaaaaacgGCGACUGGGc -3'
miRNA:   3'- auGCGCCCCUGCaUGG---------------CGCUGACCUu -5'
23813 5' -59.4 NC_005261.1 + 21196 0.67 0.664711
Target:  5'- aGCGCGGccgcGGACGcuggccccgGCCGCGACggcGGGc -3'
miRNA:   3'- aUGCGCC----CCUGCa--------UGGCGCUGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 22746 0.7 0.476476
Target:  5'- gGCGCGGGGcgGCGgcgGCCcacGCGuCUGGGGg -3'
miRNA:   3'- aUGCGCCCC--UGCa--UGG---CGCuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 23629 0.69 0.543854
Target:  5'- gGCGCGGcGGGgGUcggGCGGCUGGAAg -3'
miRNA:   3'- aUGCGCC-CCUgCAuggCGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 28786 0.69 0.553754
Target:  5'- gGCGCGGGcgcuCGcgGCCGCGGC-GGAGg -3'
miRNA:   3'- aUGCGCCCcu--GCa-UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 29464 0.69 0.553754
Target:  5'- gACGCGGGGAagcaGUA-CGCGGCgcuggUGGAc -3'
miRNA:   3'- aUGCGCCCCUg---CAUgGCGCUG-----ACCUu -5'
23813 5' -59.4 NC_005261.1 + 30788 0.66 0.724549
Target:  5'- cGCgGCGGuGGAgGUGCUGgGGCcGGAGg -3'
miRNA:   3'- aUG-CGCC-CCUgCAUGGCgCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 31604 0.66 0.72357
Target:  5'- gGCGCGcaGGGCGUGCugcugcuCGCGACgcgGGAc -3'
miRNA:   3'- aUGCGCc-CCUGCAUG-------GCGCUGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 32228 0.66 0.724549
Target:  5'- -cCGCGGcGGugGccuucugcgcgGCCGCGcuGCUGGAGc -3'
miRNA:   3'- auGCGCC-CCugCa----------UGGCGC--UGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 32390 0.66 0.72357
Target:  5'- gGCGCGGcGGcgucccggagcGCGUGCCgccgccgGCGACgGGAGc -3'
miRNA:   3'- aUGCGCC-CC-----------UGCAUGG-------CGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 34931 0.66 0.705814
Target:  5'- cACGCGGgGGGCGgccggcgcgacccggGCCcgGCGGcCUGGAGa -3'
miRNA:   3'- aUGCGCC-CCUGCa--------------UGG--CGCU-GACCUU- -5'
23813 5' -59.4 NC_005261.1 + 36578 0.7 0.476476
Target:  5'- --aGCGGGGGCccGCCGCGGCcaccgGGGGg -3'
miRNA:   3'- augCGCCCCUGcaUGGCGCUGa----CCUU- -5'
23813 5' -59.4 NC_005261.1 + 42632 0.67 0.684852
Target:  5'- --aGCGGGGACucggccGCCGCGGCcgcgcGGAAc -3'
miRNA:   3'- augCGCCCCUGca----UGGCGCUGa----CCUU- -5'
23813 5' -59.4 NC_005261.1 + 43410 0.71 0.45798
Target:  5'- gGCGcCGGGGGCGgccuccGCCGCcGGCgGGGAg -3'
miRNA:   3'- aUGC-GCCCCUGCa-----UGGCG-CUGaCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.