miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 43786 0.66 0.743965
Target:  5'- cGCGCGGaGGGC--GCCGCGGgUGaGGGg -3'
miRNA:   3'- aUGCGCC-CCUGcaUGGCGCUgAC-CUU- -5'
23813 5' -59.4 NC_005261.1 + 44888 0.67 0.674798
Target:  5'- -cCGCGGGGAUG-GCCGgGGCguacacGGAc -3'
miRNA:   3'- auGCGCCCCUGCaUGGCgCUGa-----CCUu -5'
23813 5' -59.4 NC_005261.1 + 47618 0.68 0.583748
Target:  5'- -cUGCGGGGGCG-GCCGCGGCc---- -3'
miRNA:   3'- auGCGCCCCUGCaUGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 57892 0.68 0.634326
Target:  5'- gGCaCGGGGACGgccACCGCGuCgcGGAAg -3'
miRNA:   3'- aUGcGCCCCUGCa--UGGCGCuGa-CCUU- -5'
23813 5' -59.4 NC_005261.1 + 68087 0.75 0.264653
Target:  5'- -cCGCGGGGGCGgggagGCCGUgaaguucgGGCUGGAGc -3'
miRNA:   3'- auGCGCCCCUGCa----UGGCG--------CUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 68852 0.77 0.188582
Target:  5'- -cCGCGGGGACGcccucUGCCGCGGCUGu-- -3'
miRNA:   3'- auGCGCCCCUGC-----AUGGCGCUGACcuu -5'
23813 5' -59.4 NC_005261.1 + 68958 0.66 0.703828
Target:  5'- cGCGCGGGGACcugGUgcgcgccACCGCGGCccuuuucGGGc -3'
miRNA:   3'- aUGCGCCCCUG---CA-------UGGCGCUGa------CCUu -5'
23813 5' -59.4 NC_005261.1 + 71811 0.68 0.611009
Target:  5'- -cCGUGGGGACGUaggagacgggccacACCGCGGCg---- -3'
miRNA:   3'- auGCGCCCCUGCA--------------UGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 71965 0.66 0.704821
Target:  5'- gGCGCGGGGcGCGgaGCgCGCGGCaGGu- -3'
miRNA:   3'- aUGCGCCCC-UGCa-UG-GCGCUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 74708 0.66 0.734301
Target:  5'- cGCGCGGGcGCGgaaccggGCCGCGGCa---- -3'
miRNA:   3'- aUGCGCCCcUGCa------UGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 74918 0.67 0.684852
Target:  5'- cGCGCGGGGgagggcgaggACGgggACUGCGGCgcGGGc -3'
miRNA:   3'- aUGCGCCCC----------UGCa--UGGCGCUGa-CCUu -5'
23813 5' -59.4 NC_005261.1 + 75162 0.7 0.504892
Target:  5'- cGCGCGGcauGGAC-UACCGCGAC-GGGc -3'
miRNA:   3'- aUGCGCC---CCUGcAUGGCGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 87890 0.66 0.71472
Target:  5'- gGCGCGGagagggcgggccGGGCGUACCGUGugUcugccgccacccGGGg -3'
miRNA:   3'- aUGCGCC------------CCUGCAUGGCGCugA------------CCUu -5'
23813 5' -59.4 NC_005261.1 + 88146 0.74 0.304216
Target:  5'- cGCGCGGGGGCGccccgGCCGCGcaGCcGGGc -3'
miRNA:   3'- aUGCGCCCCUGCa----UGGCGC--UGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 90204 0.67 0.674798
Target:  5'- aGCGCGGGGGCGgcggagcGCCcucgcGCGGC-GGGc -3'
miRNA:   3'- aUGCGCCCCUGCa------UGG-----CGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 95175 0.67 0.684852
Target:  5'- gGCGagGGGGACGUGCCccaGCc-CUGGGAc -3'
miRNA:   3'- aUGCg-CCCCUGCAUGG---CGcuGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 96454 0.69 0.524235
Target:  5'- aGCgGCGGGGuacagaaggccGCGcuCCGCGGCUGGGGg -3'
miRNA:   3'- aUG-CGCCCC-----------UGCauGGCGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 97099 0.71 0.430976
Target:  5'- gGC-CGGGGGCGccagccggGCCGCGGCcGGAGg -3'
miRNA:   3'- aUGcGCCCCUGCa-------UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 97179 0.68 0.593823
Target:  5'- -uCGCGGGcGcCGgccggGCCGCGGCcGGAAg -3'
miRNA:   3'- auGCGCCC-CuGCa----UGGCGCUGaCCUU- -5'
23813 5' -59.4 NC_005261.1 + 98005 0.73 0.355919
Target:  5'- gGCgGCGGGGGCGcugGCgGCGagGCUGGAGa -3'
miRNA:   3'- aUG-CGCCCCUGCa--UGgCGC--UGACCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.