miRNA display CGI


Results 41 - 60 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 5' -59.4 NC_005261.1 + 98054 0.67 0.668749
Target:  5'- -cCGCGGGcGGCGggACCGCGGgcggcggguguguccUUGGAGa -3'
miRNA:   3'- auGCGCCC-CUGCa-UGGCGCU---------------GACCUU- -5'
23813 5' -59.4 NC_005261.1 + 98104 0.66 0.734301
Target:  5'- gGCGCGGcGGGCGg--CGaGGCUGGGGa -3'
miRNA:   3'- aUGCGCC-CCUGCaugGCgCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 98350 0.69 0.563707
Target:  5'- gACGCGGGGGCGggggugGgCGCGGgcuCUGGc- -3'
miRNA:   3'- aUGCGCCCCUGCa-----UgGCGCU---GACCuu -5'
23813 5' -59.4 NC_005261.1 + 98395 0.67 0.684852
Target:  5'- gGCGUGGGGGCGgg-CGCGGacuCUGGu- -3'
miRNA:   3'- aUGCGCCCCUGCaugGCGCU---GACCuu -5'
23813 5' -59.4 NC_005261.1 + 100166 0.66 0.734301
Target:  5'- aGCGCGcccaGGGACGcaacGCCGUGGCggcgGGGc -3'
miRNA:   3'- aUGCGC----CCCUGCa---UGGCGCUGa---CCUu -5'
23813 5' -59.4 NC_005261.1 + 107127 0.66 0.71472
Target:  5'- cGCGCcGGcGACGgcgcccacgGCCGCGGCcaUGGAGg -3'
miRNA:   3'- aUGCGcCC-CUGCa--------UGGCGCUG--ACCUU- -5'
23813 5' -59.4 NC_005261.1 + 107694 0.69 0.540895
Target:  5'- cGCgGCGGGGGCGccgccgaacgucgcUGCCGCGGCaGGc- -3'
miRNA:   3'- aUG-CGCCCCUGC--------------AUGGCGCUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 110597 0.72 0.379895
Target:  5'- cUGCGCGuuccuGGACGUggacgccgaGCUGCGGCUGGAGc -3'
miRNA:   3'- -AUGCGCc----CCUGCA---------UGGCGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 110813 0.66 0.734301
Target:  5'- gAgGCGGGGGCGgacgggGCCGCGGac-GAGu -3'
miRNA:   3'- aUgCGCCCCUGCa-----UGGCGCUgacCUU- -5'
23813 5' -59.4 NC_005261.1 + 110993 0.66 0.704821
Target:  5'- gUGCGCcuGGGGACGcUGCCGCacGACUcgccgcGGGu -3'
miRNA:   3'- -AUGCG--CCCCUGC-AUGGCG--CUGA------CCUu -5'
23813 5' -59.4 NC_005261.1 + 111600 0.67 0.684852
Target:  5'- cACGCGGaGugGg--CGCGGCUGGGc -3'
miRNA:   3'- aUGCGCCcCugCaugGCGCUGACCUu -5'
23813 5' -59.4 NC_005261.1 + 113540 0.69 0.524235
Target:  5'- gGCuCGGGGcCGUGCgCGCG-CUGGAc -3'
miRNA:   3'- aUGcGCCCCuGCAUG-GCGCuGACCUu -5'
23813 5' -59.4 NC_005261.1 + 118031 0.67 0.684852
Target:  5'- cACGCGGGGcccgGCCGCGACg---- -3'
miRNA:   3'- aUGCGCCCCugcaUGGCGCUGaccuu -5'
23813 5' -59.4 NC_005261.1 + 118215 0.67 0.684852
Target:  5'- cUGCGCGGGG-CGcugacgGCCGCGGCcgcGGc- -3'
miRNA:   3'- -AUGCGCCCCuGCa-----UGGCGCUGa--CCuu -5'
23813 5' -59.4 NC_005261.1 + 118850 0.68 0.624184
Target:  5'- gGCGCGGaGGGCGgcgcgcCCGCGGCccUGGc- -3'
miRNA:   3'- aUGCGCC-CCUGCau----GGCGCUG--ACCuu -5'
23813 5' -59.4 NC_005261.1 + 120968 0.69 0.553754
Target:  5'- -cCGCGGGGcGCGUGCCGCcGCaGGc- -3'
miRNA:   3'- auGCGCCCC-UGCAUGGCGcUGaCCuu -5'
23813 5' -59.4 NC_005261.1 + 126958 0.72 0.371784
Target:  5'- gGCGCGGGGGCGgcagcgcgaACCGCG-CgggGGAc -3'
miRNA:   3'- aUGCGCCCCUGCa--------UGGCGCuGa--CCUu -5'
23813 5' -59.4 NC_005261.1 + 127747 0.66 0.734301
Target:  5'- gGCgGCGGGaGCGgGCCGCGGC-GGGc -3'
miRNA:   3'- aUG-CGCCCcUGCaUGGCGCUGaCCUu -5'
23813 5' -59.4 NC_005261.1 + 128508 0.67 0.654598
Target:  5'- gACGCGGcGGCGgaggcaGCCuccugGCGGCUGGAGu -3'
miRNA:   3'- aUGCGCCcCUGCa-----UGG-----CGCUGACCUU- -5'
23813 5' -59.4 NC_005261.1 + 129676 0.66 0.71472
Target:  5'- gAC-CGGGGGCGU--CGCGACUcGGGc -3'
miRNA:   3'- aUGcGCCCCUGCAugGCGCUGA-CCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.